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Table 5 Dataset used for interdomain contact predictions.

From: Analysis of the impact of solvent on contacts prediction in proteins

Interacting partners

PFAM

ID1/ID2

PDB IDa

Nb

% idenc

L1d

L2e

Xd dryf

OptXd αg

Xd wet|opt αh

Tyrosine kinase SH3/SH2 domains

PF00018/PF00017

2SRC

19

35

57

83

1.86

0.2

3.25

Alcohol dehydrogenase N-/C-domains

PF08240/PF00107

1ADG

89

23

128

143

3.52

0.2

3.64

Mg superoxide dismutase

N-/C-domains

PF00081/PF02777

1AP5

23

44

82

107

4.76

0.2

5.04

Immunoglobulin heavy/light chains

PF00047/PF00047

12E8

116

36

107

114

13.56

0

13.56

Ortnithine transferase N-/C-domains

PF02729/PF00185

1DUV

20

30

142

178

4.47

0.1

4.94

NFKB factor RHD/TIG domains

PF00554/PF01833

1SVC

21

40

199

100

4.56

0.5

4.62

STAT alpha/binding domains

PF01017/PF02864

1BF5

32

38

180

251

4.30

0.2

4.42

Mur-ligase catalytic/C-terminal domains

PF01225/PF08245

1E8C

26

25

82

208

1.84

0.1

2.12

Dynamin central/N-domains

PF00350/PF01031

2AKA

32

40

174

89

0.04

0.2

0.14

Trk C-/N-domains

PF02254/PF02080

1LNQ

42

20

114

72

0.53

1

0.78

  1. aPDB ID of the reference structure; bNumber of sequences in the multiple sequence alignment; cAverage percentage of sequences pairwise similarity; d, eLengths of the reference sequences; fValues for α = 0; gα value corresponding to the highest Xd; hXd highest value.