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Table 5 Dataset used for interdomain contact predictions.

From: Analysis of the impact of solvent on contacts prediction in proteins

Interacting partners PFAM ID1/ID2 PDB IDa Nb % idenc L1d L2e Xd dryf OptXd αg Xd wet|opt αh
Tyrosine kinase SH3/SH2 domains PF00018/PF00017 2SRC 19 35 57 83 1.86 0.2 3.25
Alcohol dehydrogenase N-/C-domains PF08240/PF00107 1ADG 89 23 128 143 3.52 0.2 3.64
Mg superoxide dismutase N-/C-domains PF00081/PF02777 1AP5 23 44 82 107 4.76 0.2 5.04
Immunoglobulin heavy/light chains PF00047/PF00047 12E8 116 36 107 114 13.56 0 13.56
Ortnithine transferase N-/C-domains PF02729/PF00185 1DUV 20 30 142 178 4.47 0.1 4.94
NFKB factor RHD/TIG domains PF00554/PF01833 1SVC 21 40 199 100 4.56 0.5 4.62
STAT alpha/binding domains PF01017/PF02864 1BF5 32 38 180 251 4.30 0.2 4.42
Mur-ligase catalytic/C-terminal domains PF01225/PF08245 1E8C 26 25 82 208 1.84 0.1 2.12
Dynamin central/N-domains PF00350/PF01031 2AKA 32 40 174 89 0.04 0.2 0.14
Trk C-/N-domains PF02254/PF02080 1LNQ 42 20 114 72 0.53 1 0.78
  1. aPDB ID of the reference structure; bNumber of sequences in the multiple sequence alignment; cAverage percentage of sequences pairwise similarity; d, eLengths of the reference sequences; fValues for α = 0; gα value corresponding to the highest Xd; hXd highest value.