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Table 3 Mean and standard deviation values (given in parentheses, reported only for datasets with size ≥ 5) for slide for the ten dinucleotide steps containing Watson-Crick basepairs.

From: Small local variations in B-form DNA lead to a large variety of global geometries which can accommodate most DNA-binding protein motifs

 

Slide

 

RNA

Free

Complex

HTH

Dinucleotide Sequence*

 

A-like (Z p > 1.3 Ã…)

B-like (Z p ≤ 0.8 Å)

All

Excl. TEH†

All

Excl. TC ‡

AA/TT

-1.4 (0.4)

NA

-0.1 (0.4)

0.0 (0.7)

-0.2 (0.4)

-0.1 (0.5)

-0.2 (0.4)

AG/CT

-1.5 (0.3)

-1.4 NA

0.1 (0.5)

-0.2 (0.7)

-0.1 (0.7)

-0.2 (0.5)

-0.2 (0.5)

GA/TC

-1.6 (0.3)

-1.9 NA

0.0 (0.5)

-0.1 (0.7)

0.1 (0.6)

-0.1 (0.6)

-0.2 (0.5)

GG/CC

-1.8 (0.3)

-1.7 (0.3)

0.3 (0.4)

-0.3 (0.7)

-0.1 (0.7)

-0.5 (0.7)

-0.4 (0.7)

AC/GT

-1.3 (0.4)

-1.2 (0.4)

0.0 (0.6)

-0.6 (0.4)

-0.5 (0.2)

-0.5 (0.5)

-0.5 (0.4)

AT/AT

-1.2 (0.2)

-1.6 NA

-0.3 (0.3)

-0.5 (0.4)

-0.5 (0.3)

-0.6 (0.3)

-0.6 (0.3)

GC/GC

-1.3 (0.3)

-1.1 (0.3)

0.4 (0.5)

-0.1 (0.6)

-0.0 (0.7)

-0.3 (0.5)

-0.3 (0.5)

CA/TG (BI)

-1.6 (0.3)

-1.4 (0.2)

0.1 NA

-0.1 (0.9)

-0.0 (0.7)

-0.1 (0.7)

-0.2 (0.7)

CA/TG (BII)

NA

NA

2.2 (0.7)

0.9 (0.9)

0.9 (1.0)

0.7 (0.8)

0.6 (0.8)

CG/CG

-1.9 (0.3)

-1.8 (0.3)

0.7 (0.5)

0.1 (0.9)

-0.0 (0.6)

0.4 (0.7)

0.4 (0.7)

TA/TA

-1.6 (0.3)

-1.4 NA

0.5 (0.6)

0.0 (1.0)

-0.2 (0.9)

-0.0 (1.0)

-0.1 (0.9)

Overall

-1.5 (0.4)

-1.6 (0.4)

0.2 (0.8)

-0.1 (0.8)

-0.1 (0.7)

-0.2 (0.7)

-0.2 (0.6)

Fibre-Model

 

-1.5

0.6

    
  1. †TEH – TBP, Endonuclease and Hyperthermophile chromosomal protein SAC7D containing structures (excluded)
  2. ‡TC – TBP and CAP containing structures (excluded)
  3. The other specifications are as detailed in the caption to table 1.