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Table 7 Curvature data for bound DNA duplexes of length ≥ 18 basepairs, excluding terminal basepairs, for the HTH-bound DNA dataset.

From: Small local variations in B-form DNA lead to a large variety of global geometries which can accommodate most DNA-binding protein motifs

PDB ID LENGTH Succ. Bend. Ang. (°) End-to-end (°) Bend. Ang. d/l local R.O.C.(Å) RMSD (Å) Geometry Assigned Out-of-Plane (°) Bend. Ang.
   AVG. S.D. MAX.     Cfit Lfit Cfit/Lfit   
     Value Position         
1KX5 30 15.1 10.5 51.9 A10A11A12 126.7 0.77 37.9 0.6 20.0 0.03 C 0.1
1J59 28 25.3 16.2 66.5 T9G10A11 98.5 0.85 47.2 0.7 21.4 0.03 C -41.9
1RUN 28 30.4 17.1 71.1 T9G10A11 109.7 0.85 47.8 0.6 22.2 0.03 C -50.6
1CGP 26 19.1 18.9 65.9 G7T8G9 72.4 0.86 48.2 0.8 17.9 0.04 C -51.1
1BL0 20 10.5 6.1 25.0 A6G7C8 38.8 0.94 47.0 0.7 3.6 0.19 C -68.9
1HLV 19 10.0 7.6 30.1 G15G16G17 39.3 0.95 54.6 0.6 3.3 0.18 C -129.0
1APL 18 11.8 7.3 33.0 A16C17G18 3.7 0.99 NA 4.9 0.9 5.44 L NA
1K78 23 9.1 3.2 15.6 T19G20G21 15.9 1.00 NA 2.4 1.0 2.40 L NA
4CRX 32 11.8 12.2 56.5 A17T18G19 76.3 0.82 NA 3.4 9.1 0.37 U NA
1GDT 32 15.4 13.0 60.3 T14T15A16 40.2 0.87 NA 1.6 14.5 0.11 U NA
1MNM 23 11.8 7.8 26.8 G13A14A15 58.7 0.89 NA 1.7 5.4 0.31 U NA
1JE8 18 23.0 13.0 49.6 T2A3C4 56.9 0.93 NA 1.1 5.0 0.22 U NA
1DDN 23 8.8 4.4 19.1 T13T14A15 36.0 0.95 NA 7.7 2.5 3.08 U NA
1L3L 18 9.0 5.9 19.7 C14A15C16 32.5 0.96 NA 1.5 1.6 0.94 U NA
1U78 23 10.6 12.3 51.1 T10A11G12 41.3 0.97 NA 1.4 19.6 0.07 U NA
1Z9C 24 10.0 5.9 23.9 T11A12T13 3.4 0.97 NA 6.1 2.0 3.05 U NA
1H88 23 7.4 4.5 16.8 C8A9A10 12.3 0.98 NA 1.6 7.8 0.21 U NA
1D5Y 18 8.9 5.7 21.6 C15A16A17 10.6 0.98 NA 2.6 2.0 1.30 U NA
1K61 18 8.8 6.1 22.3 T4A5A6 6.6 0.99 NA 1.3 7.1 0.18 U NA
1DU0 18 6.3 4.0 15.2 C15C16T17 10.1 0.99 NA 0.6 2.9 0.21 U NA
1RIO 25 14.8 8.7 34.1 C8C9G10 16.1 0.99 NA 0.6 2.7 0.22 U NA
6PAX 22 11.8 7.1 25.6 A8C9G10 20.4 0.99 NA 0.6 2.1 0.29 U NA
2HDD 18 10.7 5.4 23.3 T12C13C14 22.9 0.99 NA 1.2 1.8 0.67 U NA
1HDD 18 10.9 4.1 19.9 G3C4C5 1.9 0.99 NA 2.6 1.4 1.86 U NA
3HDD 18 6.5 3.7 14.4 G8T9A10 8.3 0.99 NA 3.0 1.4 2.14 U NA
1JT0 26 10.4 5.9 22.1 A23T24A25 29.8 0.99 NA 9.1 1.1 8.27 U NA
1F4K 19 7.9 5.1 20.2 T3G4A5 24.8 1.00 NA 0.8 2.4 0.33 U NA
1MDM 23 9.2 4.7 20.8 A6G7A8 15.6 1.00 NA 1.7 1.1 1.55 U NA
1HF0 20 10.5 7.3 30.7 T6G7A8 28.6 1.01 NA 1.4 0.9 1.56 U NA
  1. The calculation of successive bending angles, end-to-end bending angle, d/l local , Radius of Curvature (ROC), RMSD for circle fit (Cfit) and line fit (Lfit) and torsion angle for out-of-plane component of bending have been described in the 'Methods' section. 'MAX.' denotes the position and value of the maximum successive bending angle within the particular structure. The criteria used to assign DNA molecule geometry as curved (C), linear (L) or unassigned (U) have also been described in the 'Methods' section. The radius of curvature (ROC) and out-of-plane component of bending are reported only when a DNA molecule's geometry is assigned as curved.