Table 8 Curvature data for bound DNA duplexes of length ≥ 18 basepairs, excluding terminal basepairs, for the protein (excluding HTH)-bound DNA dataset.
PDB ID | LENGTH | Succ. Bend. Ang. (°) | End-to-end (°) Bend. Ang. | d/l local | R.O.C.(Å) | RMSD (Å) | Geometry Assigned | Out-of-Plane (°) Bend. Ang. | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Â | Â | AVG. | S.D. | MAX. | Â | Â | Â | Cfit | Lfit | Cfit/Lfit | Â | Â | |
| Â | Â | Â | Â | Value | Position | Â | Â | Â | Â | Â | Â | Â | Â |
1KX5 | 30 | 15.1 | 10.5 | 51.9 | A10A11A12 | 126.7 | 0.77 | 37.9 | 0.6 | 20.0 | 0.03 | C | 0.1 |
1KX3 | 30 | 19.3 | 9.9 | 37.4 | G3C4A5 | 129.5 | 0.77 | 37.8 | 0.7 | 10.5 | 0.07 | C | -4.7 |
1N3F | 22 | 11.7 | 8.0 | 32.6 | G12A13G14 | 23.4 | 0.97 | 65.1 | 0.5 | 3.2 | 0.16 | C | -0.5 |
1T9J | 22 | 13.3 | 9.3 | 32.0 | C6G7T8 | 26.2 | 0.97 | 65.9 | 0.6 | 13.1 | 0.05 | C | 12.5 |
1G9Z | 22 | 14.8 | 11.4 | 35.9 | T8C9G10 | 22.9 | 0.97 | 68.3 | 0.6 | 13.0 | 0.05 | C | -24.5 |
1T9I | 22 | 12.1 | 9.3 | 28.6 | C6G7T8 | 23.2 | 0.98 | 66.3 | 0.5 | 13.7 | 0.04 | C | 15.0 |
1OWF | 20 | 16.9 | 15.5 | 56.7 | T11T12G13 | 85.0 | 0.81 | NA | 1.2 | 13.2 | 0.09 | U | NA |
1CYQ | 18 | 14.0 | 4.4 | 26.5 | A13G14A15 | 55.0 | 0.90 | NA | 2.4 | 5.4 | 0.44 | U | NA |
1A73 | 18 | 14.1 | 4.5 | 23.0 | A13G14A15 | 56.7 | 0.91 | NA | 2.3 | 5.3 | 0.43 | U | NA |
1ZS4 | 23 | 9.4 | 5.0 | 18.1 | T12G13T14 | 8.1 | 0.99 | NA | 0.8 | 1.5 | 0.53 | U | NA |
1H6F | 20 | 8.3 | 4.7 | 17.5 | T15G16T17 | 26.2 | 0.99 | NA | 4.4 | 1.1 | 4.00 | U | NA |