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Table 8 Curvature data for bound DNA duplexes of length ≥ 18 basepairs, excluding terminal basepairs, for the protein (excluding HTH)-bound DNA dataset.

From: Small local variations in B-form DNA lead to a large variety of global geometries which can accommodate most DNA-binding protein motifs

PDB ID

LENGTH

Succ. Bend. Ang. (°)

End-to-end (°) Bend. Ang.

d/l local

R.O.C.(Å)

RMSD (Å)

Geometry Assigned

Out-of-Plane (°) Bend. Ang.

  

AVG.

S.D.

MAX.

   

Cfit

Lfit

Cfit/Lfit

  
    

Value

Position

        

1KX5

30

15.1

10.5

51.9

A10A11A12

126.7

0.77

37.9

0.6

20.0

0.03

C

0.1

1KX3

30

19.3

9.9

37.4

G3C4A5

129.5

0.77

37.8

0.7

10.5

0.07

C

-4.7

1N3F

22

11.7

8.0

32.6

G12A13G14

23.4

0.97

65.1

0.5

3.2

0.16

C

-0.5

1T9J

22

13.3

9.3

32.0

C6G7T8

26.2

0.97

65.9

0.6

13.1

0.05

C

12.5

1G9Z

22

14.8

11.4

35.9

T8C9G10

22.9

0.97

68.3

0.6

13.0

0.05

C

-24.5

1T9I

22

12.1

9.3

28.6

C6G7T8

23.2

0.98

66.3

0.5

13.7

0.04

C

15.0

1OWF

20

16.9

15.5

56.7

T11T12G13

85.0

0.81

NA

1.2

13.2

0.09

U

NA

1CYQ

18

14.0

4.4

26.5

A13G14A15

55.0

0.90

NA

2.4

5.4

0.44

U

NA

1A73

18

14.1

4.5

23.0

A13G14A15

56.7

0.91

NA

2.3

5.3

0.43

U

NA

1ZS4

23

9.4

5.0

18.1

T12G13T14

8.1

0.99

NA

0.8

1.5

0.53

U

NA

1H6F

20

8.3

4.7

17.5

T15G16T17

26.2

0.99

NA

4.4

1.1

4.00

U

NA

  1. The other specifications are as detailed in the caption to table 7.