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Table 1 Benchmark tests of the CLADIST program and the DICHOT system.

From: Development of an accurate classification system of proteins into structured and unstructured regions that uncovers novel structural domains: its application to human transcription factors

 

A

B

C

D

E

Test1

3546

200

1303

194

92.4%

Test2

3573

173

994

503

86.1%

Test3

3673

73

1448

49

97.7%

  1. A: Number of correctly assigned residues in structural domains
  2. B: Number of incorrectly assigned residues in structural domains
  3. C: Number of correctly assigned residues in ID regions
  4. D: Number of incorrectly assigned residues in ID regions
  5. E: Percentage of correctly assigned residues given by 100 × (A + C)/(A + B + C + D)
  6. Test1: CLADIST under standard conditions (using homologues with e-values less than 10-3); Test2: CLADIST using homologues with e-values less than 10-100; Test3, The DICHOT system
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BMC Structural Biology

ISSN: 1472-6807

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