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Table 2 Drug binding site residues

From: Molecular models of human P-glycoprotein in two different catalytic states

Pose

1

2

3

4

5

6

7

8

Colchicine

Gln946

Gln946

Ile306

Ile306

Ile306

Ile306

Ile306

Leu339

 

Tyr950

Tyr950

Phe335

Phe335

Phe335

Phe335

Phe335

Gln725

 

Tyr953

Tyr953

Phe728

Phe728

Leu339

Phe728

Phe728

Phe728

 

Phe957

Phe957

  

Phe728

  

Phe983

  

Leu975

      

RhodamineB

Leu65

His61

Phe728

Ile306

Ile306

Ile306

Ala311

Gln725

 

Ile340

Leu65

Tyr950

Phe335

Phe335

Phe728

Phe335

Phe728

 

Phe343

Val125

Tyr953

Phe728

Phe728

Phe983

Phe728

Phe983

 

Phe942

Phe938

Phe957

Phe983

Phe983

   
 

Tyr950

 

Leu975

     
 

Tyr953

       
 

Phe957

       
 

Val982

       

Verapamil

Ile306

Ile306

Ile306

Ala311

Leu65

Ile306

Ile306

Leu975

 

Phe335

Leu339

Phe335

Phe335

Val125

Phe335

Phe335

Thr333

 

Leu339

Phe343

Phe728

Phe728

Phe942

Leu339

Leu339

 
 

Gln725

Gln725

 

Leu975

 

Phe345

  
 

Phe728

Phe728

      
 

Val125

Ile306

Val125

Val125

Leu65

Ile306

Ile306

Phe343

 

Ile340

Phe335

Leu339

Leu339

Ile340

Thr333

Phe335

Gln725

 

Phe343

Leu339

Ile340

Ile340

Phe343

Phe335

Leu339

Phe728

Vinblastine

Phe942

Ile340

Phe343

Phe343

Phe728

Leu339

Phe343

Ser766

 

Gln946

Phe343

Phe938

Phe942

Gln946

Ile340

Phe728

Phe983

 

Val982

Phe728

Phe942

Val982

Phe983

Phe728

Phe983

 
 

Phe983

Phe983

Phe983

Phe983

 

Phe983

  
  1. Residues found to interact with each of the 8 predicted positions of the four different ligands (see text) docked in the central cavity of the closed nucleotide-free structure. The residues experimentally identified to alter the specificity of a particular ligand are reported in bold and underlined.