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Table 1 VAST Search results for domains with boundary conflict from the medium redundancy subset of MMDB.

From: Improving protein structure similarity searches using domain boundaries based on conserved sequence information

 

Structure Domains Total

Sequence Domains Total

Structure Domains (> = 20% Id)

Sequence Domains (> = 20% Id)

Structure Domains (<20% Id)

Sequence Domains (<20% Id)

Homologs Found

9790 (15%)

5476 (21%)

2592 (65%)

1814 (75%)

7198 (11%)

3662 (16%)

Total Hits

65150

25560

3994

2416

61156

23144