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Table 1 Summary of crystallographic data. Rp.i.m. = precision-indicating R factor, Rmerge = merging R factor

From: Initial insight into the function of the lysosomal 66.3 kDa protein from mouse by means of X-ray crystallography

PDB-ID

3FGR (xe1h; cleaved)

3FGW (KI; uncleaved)

3FGT (native; cleaved)

data set

xe1h

KI

native

wavelength (Ã…)

0.91841

1.80000

0.80150

number of images

305

300

406

oscillation steps (°)

0.5

0.5

0.4

space group

C 1 2 1

C 1 2 1

C 1 2 1

cell [Å, °]

148.74

146.69

145.57

 

89.56

88.11

88.22

 

64.81

73.55

63.27

 

β 98.68

β 111.10

β 98.10

resolution range (Ã…) a

50.00–1.70

(1.76–1.70)

46.07–2.80

(2.95–2.80)

30.00–2.40

(2.53–2.40)

completeness (%)

99.5 (96.2)

97.2 (96.2)

99.8 (100.0)

redundancy

3.2 (2.6)

3.0 (3.0)

3.4 (3.4)

unique reflections (rejections)

91,683 (164)

21,117 (418)

31,031 (3,487)

Rsym* or Rp.i.m.# (%)

3.3 (41.9)*

9.2 (28.9)#

6.1 (29.4)#

I/sigma

32.1 (2.4)

5.6 (2.0)

9.5 (3.5)

X-ray source

BL-14.2

BL-14.1

X13

Refinement statistics

   

amino acids in asu (chain)

524:

529:

524:

 

V63-T238 (A)

P61-N239 (A)

P60-N239 (A)

 

G245-S248 (A)

  
 

C249-P592 (B)

G245-D594 (A)

C249-P592 (B)

molecules in asu

1

1

1

resolution (Ã…)

29.26–1.80

46.07–2.80

29.49–2.40

Rworke

15.2

22.3

16.6

Rfreef

18.2

24.9

20.7

number of non-H atoms

   

   protein

4396

4211

4275

   water

576

176

299

   solvent

78

107

90

rmsd g

   

   bonds (Å)

0.015

0.005

0.012

   angles (°)

1.533

0.983

1.493

average B factors

24.3

37.0

28.1