Figure 2
From: Comparison of molecular dynamics and superfamily spaces of protein domain deformation
Comparisons based on variance. a) Total variance for the performed decompositions: ISVD of the SF-space, SVD of the partial MD-space containing as many snapshots as members in the superfamily (average values for 100 windows), and SVD of the MD-space containing the entire MD trajectory. The domains in the x-axis are sorted by increasing number of aminoacids. b) Ratio of SF- and MD-space variances against the number residues in the reference domain. c) Ratio of SF- and MD-space variances against number of superfamily members (log scale).