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Table 1 Secondary structure prediction for p9 using public domain semi-empirical programs

From: Solution structure of the Equine Infectious Anemia Virus p9 protein: a rationalization of its different ALIX binding requirements compared to the analogous HIV-p6 protein

Method

α-helix 1

α-helix 2

Reference

Target99

26-33

 

[40]

SSpro

26-32

41-43

[41, 42]

PORTER

26-33

 

[43]

PsiPred

26-33 (9-13)

41-42

[44]

PROF

26-32

36-39, 41-44

[45]

PHD

26-32

 

[46]

GOR I

25-51 (1-4)

 

[47]

GOR IV

26-36

40-44

[48]

HNN

25-32

40-44

[49]

SOPMA

24-33

41-51

[50]

GOR V

27-44

 

[51, 52]