Functional correlation of bacterial LuxS with their quaternary associations: interface analysis of the structure networks

Table 1 DATASET

CLASS	NAME OF ORGANISM	SwissProt ID	PDB_id	ABBREVIATIONS USED
I	H. influenzae	P44007	1j6w	1j6w
	S. epidermis	Q8CNI0	-	m1ste
	S. mutans	Q8DVK8	-	m1stm
II	H. pylori	Q9ZMW8	1j6x	1j6x
	E. coli	Q8X902	-	m1eco
	C. jejuni	Q9PN97	-	m1cam
	S. aureus	Q6GEU1	-	m1sta
III	B. subtilis	O34667	1j98	1j98
	B. anthracis	Q81KF3	-	m1bac
	B. clausii	Q5WDW1	-	m2bac
	B. cereus	Q816N5	-	m3bac
IV	D. radiodurans	Q9RRU8	1inn	1inn
	D. geothermalis	Q1IW42	-	m1geo
	P. ingrahamii	A1SZZ2	-	m1psy
	T. thermophilus	Q72IE6	-	m1the
V	V. cholerae	Q9KUG4	-	m1vib
	C. perfringens	Q0SWJ6	-	m1clo
	S. pyogenes	P0C0C7	-	m1pyo
	S. flexneri	Q83JZ4	-	m1shi
VI	L. johnsoni	Q74HV0	-	m1lac
	L. reuteri	Q5QHW1	-	m2lac
	L. acidophilus	Q5FK48	-	m3lac
	B. longum	Q8G568	-	m1bfi

Classification of LuxS from 23 organisms on the basis of their effect on pathogenesis and/or biological manifestations. I – LuxS mutation affects biofilm formation; II – LuxS mutation affects motility/flagella formation/metabolism; III – LuxS from organisms belonging to the Bacillus sp.; IV – LuxS from extremophiles; V – LuxS mutation affects toxin production; VI – LuxS from probiotics. The abbreviations for the modelled structures are preceded by an 'm' to indicate that these structures are modelled using MODELLER.

ISSN: 1472-6807