Skip to main content

Table 4 Structurally similar helical ranges of unknown PF01036-structures

From: The observation of evolutionary interaction pattern pairs in membrane proteins

  D5H9B4_SALRM    Q9HH34_HALSI    BACR1_HALSS  
Helix Amino acids Similarity Helix Amino acids Similarity Helix Amino acids Similarity
1 23 95.6% 1 23 82.6% 1 23 73.9%
2 20 95% 2 23 91.3% 2 23 78.2%
3 18 88% 3 23 95.6% 3 23 0%
4 18 100% 4 23 86.9% 4 20 90%
5 23 91.3% 5 20 100% 5 20 70%
6 23 95.6% 6 23 91.3% 6 23 69.5%
7 23 73.9% 7 23 86.9% 7 23 82.6%
  1. For each Bacteriorhodopsin-like protein, the number of amino acids of individual TMHMM predicted helices are given. Similarity values describe consistent helical ranges, which are covered by EIPPs.