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Table 5 Structurally similar helical ranges of unknown PF00230-structures

From: The observation of evolutionary interaction pattern pairs in membrane proteins

 

G7RII8_ECOC1

  

AQP5_MOUSE

  

PIP27_MAIZE

 

Helix

Amino acids

Similarity

Helix

Amino acids

Similarity

Helix

Amino acids

Similarity

1

23

100%

1

23

73.9%

1

23

86.9%

2

23

86.9%

2

23

73.9%

2

23

82.6%

3

23

100%

3

23

73.9%

3

23

78.2%

4

23

78.2%

4

18

94.4%

4

20

100%

5

23

78.2%

5

23

73.9%

5

23

78.2%

6

18

100%

6

18

94.4%

6

18

77.7%

  1. For each Major Intrinsic Protein, the number amino acids of individual TMHMM predicted helices are given. Similarity values describe consistent helical ranges, which are covered by EIPPs.