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Table 4 Sequences that appear both in and outside of cluster VIII; only the entry outside of the cluster is identified. The RMSD is evaluated from the initiator of cluster VIII; H stands for helix, L for loop and S for strand

From: Clustering and percolation in protein loop structures

Sequence PDB entry PDB structure RMSD(Å)
TDGSTD 2vb1_A (47–52) LLLLSS 0.24
TDGSTD 3lzt_A (47–52) LLLLSS 0.26
TDGSTD 4lzt_A (47–52) LLLLSS 0.27
DAGMRF 3odv_A (20–25) HHLLSS 0.71
ESGNVV 2agt_A (126–131) LLLLLL 0.63
ESGNVV 2pzn_A (126–131) LLLLLL 0.72
ESGNVV 3u2c_A (126–131) LLLLLL 0.54
ADGKPV 4hen_A (54–59) SLLSSS 1.43
ESGLSK 1g2y_B (18–23) HHHLHH 1.19
NVGWPR 1mn8_B (47–52) HLLLLL 0.79
KDGVAD 4a7u_A (91–96) LLLLSS 0.68
SDGNGM 1iee_A (100–105) HLLHHH 1.12
SDGNGM 2vb1_A (100–105) HHLLHH 0.38
SDGNGM 4b4e_A (100–105) HLLHHH 1.07
SDGNGM 4lzt_A (100–105) HLLLLH 0.33
QQGLTL 3akq_A (161–166) HHLLLL 0.62
QQGLTL 3akt_A (161–166) HHLLLL 0.66
QQGLTL 3akt_B (161–166) HHLLLL 0.59