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Table 4 Sequences that appear both in and outside of cluster VIII; only the entry outside of the cluster is identified. The RMSD is evaluated from the initiator of cluster VIII; H stands for helix, L for loop and S for strand

From: Clustering and percolation in protein loop structures

Sequence

PDB entry

PDB structure

RMSD(Å)

TDGSTD

2vb1_A (47–52)

LLLLSS

0.24

TDGSTD

3lzt_A (47–52)

LLLLSS

0.26

TDGSTD

4lzt_A (47–52)

LLLLSS

0.27

DAGMRF

3odv_A (20–25)

HHLLSS

0.71

ESGNVV

2agt_A (126–131)

LLLLLL

0.63

ESGNVV

2pzn_A (126–131)

LLLLLL

0.72

ESGNVV

3u2c_A (126–131)

LLLLLL

0.54

ADGKPV

4hen_A (54–59)

SLLSSS

1.43

ESGLSK

1g2y_B (18–23)

HHHLHH

1.19

NVGWPR

1mn8_B (47–52)

HLLLLL

0.79

KDGVAD

4a7u_A (91–96)

LLLLSS

0.68

SDGNGM

1iee_A (100–105)

HLLHHH

1.12

SDGNGM

2vb1_A (100–105)

HHLLHH

0.38

SDGNGM

4b4e_A (100–105)

HLLHHH

1.07

SDGNGM

4lzt_A (100–105)

HLLLLH

0.33

QQGLTL

3akq_A (161–166)

HHLLLL

0.62

QQGLTL

3akt_A (161–166)

HHLLLL

0.66

QQGLTL

3akt_B (161–166)

HHLLLL

0.59