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Table 3 Prediction accuracy for the combined prediction of the Vα/Vβ and TCR/pMHC association angles

From: DynaDom: structure-based prediction of T cell receptor inter-domain and T cell receptor-peptide-MHC (class I) association angles

ESa Variantsb CR c CE d
  Q R # % # %
MC00 off off 39 73.6 37 69.8
MC01 off on 39 73.6 38 71.7
MC10 on off 39 73.6 38 71.7
MC11 on on 39 73.6 38 71.7
  1. aEvaluation setting label
  2. bVariants: Q = glutamine carboxamide group orientation correction, R = rigid body position restraint
  3. cAbsolute and relative prediction rate according to the RMSD based criterion (i.e., CR) in data set DSC (53 structures). For each prediction run, the 11 models are ranked by RMSD and a success is counted if the selected structure has an RMSD value lower than 2 Å
  4. dSame as c) using the energy criterion to rank the 11 structures and select the best. The prediction is considered as successful if the selected structure has an RMSD value lower than 2 Å