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Fig. 6 | BMC Structural Biology

Fig. 6

From: A comparative analysis of the foamy and ortho virus capsid structures reveals an ancient domain duplication

Fig. 6

DALI scores with decoys. The DALI Z-scores (Y-axis) are plotted against the log 10 of their ranked position in the list of hits (X-axis) with the amino-terminal domain (N) as T=red, F=cyan dots and the carboxy-terminal domain (C) as T=magenta and F=green dots, where T is a true capsid hit and F is a false hit to a non-capsid protein. Four sets of decoys are compared to these, consisting of the reversed foamy capsid domains in black and the reversed HIV capsid domains in dark-blue (with a circle = N and a square = C domains in both). The DALI score for each set of hits has been slightly displaced to prevent coincident dots from being obscured. (This happens because of the integral number of residues and the DALI score being specified to only one decimal place). a full PBD. b PDB-90

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