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Fig. 3 | BMC Structural Biology

Fig. 3

From: re-TAMD: exploring interactions between H3 peptide and YEATS domain using enhanced sampling

Fig. 3

YEATS/Peptide interaction. Statistics of polar (red), hydrophobic (green) and total (cyan) YEATS residue contacts for trajectories TAMDYpt13 (a), TAMDYpt7 (b), TAMDYpt3 (c). Two atoms are considered in contact when their inter-atomic distance is less than 4 Å. For hydrophobic contacts, the atoms in contact have partial charges with absolute values smaller than 0.2. For polar contacts, they have partial charges with opposite signs. The partial charges come from the AMBER ff03 force field [47]. This analysis was done with a python script using the MDAnalysis module [52]

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