Table 1 Summary comparison of virulence factor candidates from whole genome sequencing and corresponding Phyre2-modeled proteins
Protein | Genome Annotation [8] | Phyre2 Model Templates: 1st rank model and potential virulence model(s) |
|---|---|---|
TPANIC_0027 | Putative hemolysin (HlyC) | 1st rank: CorC Magnesium/Cobalt efflux protein (E. coli) 5th rank: Hemolysin-like protein (Oenococcus oeni) |
TPANIC_0028 | Putative hemolysin (HlyC) | 1st rank: CorC Magnesium/Cobalt efflux protein (E. coli) 5th rank: Hemolysin-like protein (Oenococcus oeni) |
TPANIC_0399 | Type 3 (virulence-related) Secretory pathway protein (FliF) | 1st rank: PrgH (Salmonella typhimurium type 3 secretion system protein) 2nd rank: EscJ (E. coli Type 3 secretion system protein) |
TPANIC_0401 | Type 3 (virulence-related) Secretory pathway protein (FliH) | 1st rank: V-type proton ATPase subunit E (yeast) No potential virulence models |
TPANIC_0402 | Type 3 (virulence-related) Secretory pathway protein (FliL) | 1st rank: Flagellar type 3 ATPase FliI (Salmonella enterica) No potential virulence models |
TPANIC_0649 | Putative hemolysin (TlyC) | 1st rank: CorC Magnesium/Cobalt efflux protein (E. coli) 5th rank: Hemolysin-like protein (Oenococcus oeni) |
TPANIC_0714 | Type 3 (virulence-related) secretory pathway protein (FlhA) | 1st rank: Flagellar biosynthesis protein FlhA (Helicobacter pylori) 3rd rank: InvA (S. enterica type 3 secretion system invasion protein) 5th rank: MxiA (Shigella flexneri type 3 secretion system invasion protein) |
TPANIC_0715 | Type 3 (virulence-related) secretory pathway protein (FlhB) | 1st rank: YscU (Y. pestis type 3 secretion system protein) 2nd rank: EscU (E. coli type 3 secretion system protein) 3rd rank: EscU (E. coli type 3 secretion system protein) |
TPANIC_0936 | Putative hemolysin | 1st rank: CorC Magnesium/Cobalt efflux protein (E. coli) 5th rank: Hemolysin-like protein (Oenococcus oeni) |
TPANIC_1037 | Putative hemolysin III (HlyIII) | 1st rank: Human adiponectin receptor 1 |