An improved protein structure evaluation using a semi-empirically derived structure property

BMC Structural Biology

Table 2 Different validation parameters obtained for confusion set of models

Name of the proteins	Validation Parameters of models
Name of the proteins	Models	Energy Score	Ramachandran Score	G factor	Verified 3D (% residue)
Albumin	1ao6	− 1.1969 × 10⁵	88.50	0.22	92.39
	1	−1.2280 × 10⁵	95.1	0.16	94.53
	2	−1.2297 × 10⁵	95.4	0.18	96.58
	3	−1.2269 × 10⁵	94.7	0.1	97.09
	4	−1.2262 × 10⁵	94.1	0.17	96.75
	5	−1.2283 × 10⁵	95.2	0.17	99.15
Cytocrome c	1new	−6.6803 × 10³	65.50	−0.38	79.41
	1	− 6.3532 × 10³	93.1	−0.03	77.94
	2	−6.3340 × 10³	91.4	0.00	51.47
	3	−6.3668 × 10³	89.7	0.01	79.41
	4	−6.3291 × 10³	84.5	0.01	97.06
	5	−6.2220 × 10³	89.7	−0.03	73.53
Ferritin	1ro3	−3.4552 × 10³	23.7	−0.42	100.00
	1	−4.3944 × 10³	76.3	−0.23	93.88
	2	− 4.2660 × 10³	78.9	−0.37	100.00
	3	−4.3860 × 10³	78.9	−0.21	91.84
	4	−3.7259 × 10³	65.8	−0.69	97.96
	5	−3.9113 × 10³	63.2	−0.85	100.00
Lysozyme	2vb1	−1.3138 × 10⁴	88.50	0.01	100.00
	1	−2.2767 × 10⁴	93.8	0.06	100.00
	2	−2.2488 × 10⁴	93.8	0.05	100.00
	3	−2.2639 × 10⁴	91.2	0.04	100.00
	4	−2.2616 × 10⁴	94.7	0.08	100.00
	5	−2.2564 × 10⁴	94.7	0.03	100.00
Insulin	2h8b	−7.5931 × 103	77.8	.28	0.00
	1	−4.9314 × 103	84.8	−.16	0.00
	2	−4.9427 × 103	91.3	−.22	0.00
	3	−5.1093 × 103	91.3	−.08	0.00
	4	−4.8367 × 103	80.4	−.15	0.00
	5	−4.8419 × 103	80.4	−.10	0.00
Hemoglobin	1a3n	−1.2495 × 105	94.0	.21	100.00
	1	−1.2209 × 105	91.6	.05	100.00
	2	−1.2216 × 105	91.4	.05	99.31
	3	−1.2295 × 105	91.5	.05	99.31
	4	−1.1820 × 105	88.9	−.26	100.00
	5	−1.2216 × 105	91.4	.05	99.31

ISSN: 1472-6807