TY - JOUR AU - Roussigne, M. AU - Kossida, S. AU - Lavigne, A. -. C. AU - Clouaire, T. AU - Ecochard, V. AU - Glories, A. AU - Amalric, F. AU - Girard, J. -. P. PY - 2003 DA - 2003// TI - The THAP domain: a novel protein motif with similarity to the DNA-binding domain of P element transposase JO - Trends Biochem Sci VL - 28 UR - https://doi.org/10.1016/S0968-0004(02)00013-0 DO - 10.1016/S0968-0004(02)00013-0 ID - Roussigne2003 ER - TY - JOUR AU - Macfarlan, T. AU - Kutney, S. AU - Altman, B. AU - Montross, R. AU - Yu, J. AU - Chakravarti, D. PY - 2004 DA - 2004// TI - Human THAP7 Is a Chromatin-associated, Histone Tail-binding Protein That Represses Transcription via Recruitment of HDAC3 and Nuclear Hormone Receptor Corepressor JO - J Biol Chem VL - 280 UR - https://doi.org/10.1074/jbc.M411675200 DO - 10.1074/jbc.M411675200 ID - Macfarlan2004 ER - TY - JOUR AU - Dejosez, M. AU - Krumenacker, J. S. AU - Zitur, L. J. AU - Passeri, M. AU - Chu, L. -. F. AU - Songyang, Z. AU - Thomson, J. A. AU - Zwaka, T. P. PY - 2008 DA - 2008// TI - Ronin is essential for embryogenesis and the pluripotency of mouse embryonic stem cells JO - Cell VL - 133 UR - https://doi.org/10.1016/j.cell.2008.05.047 DO - 10.1016/j.cell.2008.05.047 ID - Dejosez2008 ER - TY - JOUR AU - Lin, Y. AU - Khokhlatchev, A. AU - Figeys, D. AU - Avruch, J. PY - 2002 DA - 2002// TI - Death-associated protein 4 binds MST1 and augments MST1-induced apoptosis JO - J Biol Chem VL - 277 UR - https://doi.org/10.1074/jbc.M202630200 DO - 10.1074/jbc.M202630200 ID - Lin2002 ER - TY - JOUR AU - Cayrol, C. AU - Lacroix, C. AU - Mathe, C. AU - Ecochard, V. AU - Ceribelli, M. AU - Loreau, E. AU - Lazar, V. AU - Dessen, P. AU - Mantovani, R. AU - Aguilar, L. AU - Girard, J. -. P. PY - 2007 DA - 2007// TI - The THAP-zinc finger protein THAP1 regulates endothelial cell proliferation through modulation of pRB/E2F cell-cycle target genes JO - Blood VL - 109 UR - https://doi.org/10.1182/blood-2006-03-012013 DO - 10.1182/blood-2006-03-012013 ID - Cayrol2007 ER - TY - JOUR AU - Balakrishnan, M. P. AU - Cilenti, L. AU - Mashak, Z. AU - Popat, P. AU - Alnemri, E. S. AU - Zervos, A. S. PY - 2009 DA - 2009// TI - THAP5 is a human cardiac-specific inhibitor of cell cycle that is cleaved by the proapoptotic Omi/HtrA2 protease during cell death JO - Am J Physiol Heart Circ Physiol VL - 297 UR - https://doi.org/10.1152/ajpheart.00234.2009 DO - 10.1152/ajpheart.00234.2009 ID - Balakrishnan2009 ER - TY - JOUR AU - Majumdar, S. AU - Singh, A. AU - Rio, D. C. PY - 2013 DA - 2013// TI - The human THAP9 gene encodes an active P-element DNA transposase JO - Science VL - 339 UR - https://doi.org/10.1126/science.1231789 DO - 10.1126/science.1231789 ID - Majumdar2013 ER - TY - JOUR AU - Richter, A. AU - Hollstein, R. AU - Hebert, E. AU - Vulinovic, F. AU - Eckhold, J. AU - Osmanovic, A. AU - Depping, R. AU - Kaiser, F. J. AU - Lohmann, K. PY - 2017 DA - 2017// TI - In-depth Characterization of the Homodimerization Domain of the Transcription Factor THAP1 and Dystonia-Causing Mutations Therein JO - J Mol Neurosci VL - 62 UR - https://doi.org/10.1007/s12031-017-0904-2 DO - 10.1007/s12031-017-0904-2 ID - Richter2017 ER - TY - JOUR AU - Gervais, V. AU - Campagne, S. AU - Durand, J. AU - Muller, I. AU - Milon, A. PY - 2013 DA - 2013// TI - NMR studies of a new family of DNA binding proteins: the THAP proteins JO - J Biomol NMR VL - 56 UR - https://doi.org/10.1007/s10858-012-9699-1 DO - 10.1007/s10858-012-9699-1 ID - Gervais2013 ER - TY - JOUR AU - Leite, K. R. M. AU - Morais, D. R. AU - Reis, S. T. AU - Viana, N. AU - Moura, C. AU - Florez, M. G. AU - Silva, I. A. AU - Dip, N. AU - Srougi, M. PY - 2013 DA - 2013// TI - MicroRNA 100: a context dependent miRNA in prostate cancer JO - Clinics VL - 68 UR - https://doi.org/10.6061/clinics/2013(06)12 DO - 10.6061/clinics/2013(06)12 ID - Leite2013 ER - TY - JOUR AU - Burkhard, P. AU - Stetefeld, J. AU - Strelkov, S. V. PY - 2001 DA - 2001// TI - Coiled coils: a highly versatile protein folding motif JO - Trends Cell Biol VL - 11 UR - https://doi.org/10.1016/S0962-8924(00)01898-5 DO - 10.1016/S0962-8924(00)01898-5 ID - Burkhard2001 ER - TY - JOUR AU - Lupas, A. N. AU - Bassler, J. PY - 2017 DA - 2017// TI - Coiled Coils - A Model System for the 21st Century JO - Trends Biochem Sci VL - 42 UR - https://doi.org/10.1016/j.tibs.2016.10.007 DO - 10.1016/j.tibs.2016.10.007 ID - Lupas2017 ER - TY - JOUR AU - Schiffer, M. AU - Edmundson, A. B. PY - 1967 DA - 1967// TI - Use of Helical Wheels to Represent the Structures of Proteins and to Identify Segments with Helical Potential JO - Biophys J VL - 7 UR - https://doi.org/10.1016/S0006-3495(67)86579-2 DO - 10.1016/S0006-3495(67)86579-2 ID - Schiffer1967 ER - TY - JOUR AU - Fischer, N. W. AU - Prodeus, A. AU - Malkin, D. AU - Gariépy, J. PY - 2016 DA - 2016// TI - p53 oligomerization status modulates cell fate decisions between growth, arrest and apoptosis JO - Cell Cycle VL - 15 UR - https://doi.org/10.1080/15384101.2016.1241917 DO - 10.1080/15384101.2016.1241917 ID - Fischer2016 ER - TY - JOUR AU - O’Shea, E. AU - Klemm, J. AU - Kim, P. AU - Alber, T. PY - 1991 DA - 1991// TI - X-ray structure of the GCN4 leucine zipper, a two-stranded, parallel coiled coil JO - Science VL - 254 UR - https://doi.org/10.1126/science.1948029 DO - 10.1126/science.1948029 ID - O’Shea1991 ER - TY - JOUR AU - Clarke, M. AU - Spudich, J. A. PY - 1977 DA - 1977// TI - Nonmuscle Contractile Proteins: The Role of Actin and Myosin in Cell Motility and Shape Determination JO - Annu Rev Biochem VL - 46 UR - https://doi.org/10.1146/annurev.bi.46.070177.004053 DO - 10.1146/annurev.bi.46.070177.004053 ID - Clarke1977 ER - TY - JOUR AU - Michel, K. AU - O’Brochta, D. A. AU - Atkinson, P. W. PY - 2003 DA - 2003// TI - The C-terminus of the Hermes transposase contains a protein multimerization domain JO - Insect Biochem Mol Biol VL - 33 UR - https://doi.org/10.1016/S0965-1748(03)00102-4 DO - 10.1016/S0965-1748(03)00102-4 ID - Michel2003 ER - TY - JOUR AU - Gale, M. AU - Blakely, C. M. AU - Hopkins, D. A. AU - Melville, M. W. AU - Wambach, M. AU - Romano, P. R. AU - Katze, M. G. PY - 1998 DA - 1998// TI - Regulation of interferon-induced protein kinase PKR: modulation of P58IPK inhibitory function by a novel protein, P52rIPK JO - Mol Cell Biol VL - 18 UR - https://doi.org/10.1128/MCB.18.2.859 DO - 10.1128/MCB.18.2.859 ID - Gale1998 ER - TY - JOUR AU - Cukier, C. D. AU - Maveyraud, L. AU - Saurel, O. AU - Guillet, V. AU - Milon, A. AU - Gervais, V. PY - 2016 DA - 2016// TI - The C-terminal region of the transcriptional regulator THAP11 forms a parallel coiled-coil domain involved in protein dimerization JO - J Struct Biol VL - 194 UR - https://doi.org/10.1016/j.jsb.2016.03.010 DO - 10.1016/j.jsb.2016.03.010 ID - Cukier2016 ER - TY - JOUR AU - An, D. R. AU - Im, H. N. AU - Jang, J. Y. AU - Kim, H. S. AU - Kim, J. AU - Yoon, H. J. AU - Hesek, D. AU - Lee, M. AU - Mobashery, S. AU - Kim, S. J. AU - Suh, S. W. PY - 2016 DA - 2016// TI - Structural Basis of the Heterodimer Formation between Cell Shape-Determining Proteins Csd1 and Csd2 from Helicobacter pylori JO - PLoS One VL - 11 UR - https://doi.org/10.1371/journal.pone.0164243 DO - 10.1371/journal.pone.0164243 ID - An2016 ER - TY - JOUR AU - Parry, D. A. D. AU - Fraser, R. D. B. AU - Squire, J. M. PY - 2008 DA - 2008// TI - Fifty years of coiled-coils and alpha-helical bundles: a close relationship between sequence and structure JO - J Struct Biol VL - 163 UR - https://doi.org/10.1016/j.jsb.2008.01.016 DO - 10.1016/j.jsb.2008.01.016 ID - Parry2008 ER - TY - JOUR AU - Mazars, R. AU - Gonzalez-de-Peredo, A. AU - Cayrol, C. AU - Lavigne, A. -. C. AU - Vogel, J. L. AU - Ortega, N. AU - Lacroix, C. AU - Gautier, V. AU - Huet, G. AU - Ray, A. AU - Monsarrat, B. AU - Kristie, T. M. AU - Girard, J. -. P. PY - 2010 DA - 2010// TI - The THAP-zinc finger protein THAP1 associates with coactivator HCF-1 and O-GlcNAc transferase: a link between DYT6 and DYT3 dystonias JO - J Biol Chem VL - 285 UR - https://doi.org/10.1074/jbc.M109.072579 DO - 10.1074/jbc.M109.072579 ID - Mazars2010 ER - TY - JOUR AU - Drozdetskiy, A. AU - Cole, C. AU - Procter, J. AU - Barton, G. J. PY - 2015 DA - 2015// TI - JPred4: a protein secondary structure prediction server JO - Nucleic Acids Res VL - 43 UR - https://doi.org/10.1093/nar/gkv332 DO - 10.1093/nar/gkv332 ID - Drozdetskiy2015 ER - TY - JOUR AU - Jones, D. T. PY - 1999 DA - 1999// TI - Protein secondary structure prediction based on position-specific scoring matrices JO - J Mol Biol VL - 292 UR - https://doi.org/10.1006/jmbi.1999.3091 DO - 10.1006/jmbi.1999.3091 ID - Jones1999 ER - TY - JOUR AU - Kelley, L. A. AU - Mezulis, S. AU - Yates, C. M. AU - Wass, M. N. AU - Sternberg, M. J. E. PY - 2015 DA - 2015// TI - The Phyre2 web portal for protein modeling, prediction and analysis JO - Nat Protoc VL - 10 UR - https://doi.org/10.1038/nprot.2015.053 DO - 10.1038/nprot.2015.053 ID - Kelley2015 ER - TY - JOUR AU - Altschul, S. F. AU - Madden, T. L. AU - Schäffer, A. A. AU - Zhang, J. AU - Zhang, Z. AU - Miller, W. AU - Lipman, D. J. AU - Gapped, B. L. A. S. T. PY - 1997 DA - 1997// TI - PSI-BLAST: a new generation of protein database search programs JO - Nucleic Acids Res VL - 25 UR - https://doi.org/10.1093/nar/25.17.3389 DO - 10.1093/nar/25.17.3389 ID - Altschul1997 ER - TY - JOUR AU - Cuff, J. A. AU - Barton, G. J. PY - 2000 DA - 2000// TI - Application of multiple sequence alignment profiles to improve protein secondary structure prediction JO - Proteins VL - 40 UR - https://doi.org/3.0.CO;2-Q DO - 3.0.CO;2-Q ID - Cuff2000 ER - TY - JOUR AU - Sievers, F. AU - Wilm, A. AU - Dineen, D. AU - Gibson, T. J. AU - Karplus, K. AU - Li, W. AU - Lopez, R. AU - McWilliam, H. AU - Remmert, M. AU - Söding, J. AU - Thompson, J. D. AU - Higgins, D. G. PY - 2011 DA - 2011// TI - Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega JO - Mol Syst Biol VL - 7 UR - https://doi.org/10.1038/msb.2011.75 DO - 10.1038/msb.2011.75 ID - Sievers2011 ER - TY - JOUR AU - Capra, J. A. AU - Singh, M. PY - 2007 DA - 2007// TI - Predicting functionally important residues from sequence conservation JO - Bioinformatics VL - 23 UR - https://doi.org/10.1093/bioinformatics/btm270 DO - 10.1093/bioinformatics/btm270 ID - Capra2007 ER - TY - JOUR AU - Yang, J. AU - Zhang, Y. PY - 2015 DA - 2015// TI - I-TASSER server: new development for protein structure and function predictions JO - Nucleic Acids Res VL - 43 UR - https://doi.org/10.1093/nar/gkv342 DO - 10.1093/nar/gkv342 ID - Yang2015 ER - TY - JOUR AU - Peng, J. AU - Xu, J. PY - 2011 DA - 2011// TI - RaptorX: exploiting structure information for protein alignment by statistical inference JO - Proteins VL - 79 UR - https://doi.org/10.1002/prot.23175 DO - 10.1002/prot.23175 ID - Peng2011 ER - TY - JOUR AU - Wu, S. AU - Zhang, Y. PY - 2007 DA - 2007// TI - LOMETS: A local meta-threading-server for protein structure prediction JO - Nucleic Acids Res VL - 35 UR - https://doi.org/10.1093/nar/gkm251 DO - 10.1093/nar/gkm251 ID - Wu2007 ER - TY - STD TI - DrawCoil 1.0 https://grigoryanlab.org/drawcoil/. Accessed 10 June 2017. UR - https://grigoryanlab.org/drawcoil/ ID - ref33 ER - TY - JOUR AU - Szklarczyk, D. AU - Franceschini, A. AU - Wyder, S. PY - 2015 DA - 2015// TI - STRING v10: protein–protein interaction networks, integrated over the tree of life JO - Nucleic Acids Res VL - 43 UR - https://doi.org/10.1093/nar/gku1003 DO - 10.1093/nar/gku1003 ID - Szklarczyk2015 ER - TY - JOUR AU - Wolf, E. AU - Kim, P. S. AU - Berger, B. PY - 1997 DA - 1997// TI - MultiCoil: A Program for Predicting Two- and Three-Stranded Coiled Coils JO - Protein Sci VL - 6 UR - https://doi.org/10.1002/pro.5560060606 DO - 10.1002/pro.5560060606 ID - Wolf1997 ER - TY - JOUR AU - Vincent, T. L. AU - Green, P. J. AU - Woolfson, D. N. PY - 2013 DA - 2013// TI - LOGICOIL: Multi-state classification of coiled-coil oligomeric state JO - Bioinformatics VL - 29 UR - https://doi.org/10.1093/bioinformatics/bts648 DO - 10.1093/bioinformatics/bts648 ID - Vincent2013 ER - TY - JOUR AU - Sillitoe, I. AU - Lewis, T. E. AU - Cuff, A. AU - Das, S. AU - Ashford, P. AU - Dawson, N. L. AU - Furnham, N. AU - Laskowski, R. A. AU - Lee, D. AU - Lees, J. G. AU - Lehtinen, S. AU - Studer, R. A. AU - Thornton, J. AU - Orengo, C. A. PY - 2015 DA - 2015// TI - CATH: comprehensive structural and functional annotations for genome sequences JO - Nucleic Acids Res VL - 43 UR - https://doi.org/10.1093/nar/gku947 DO - 10.1093/nar/gku947 ID - Sillitoe2015 ER - TY - JOUR AU - Murzin, A. G. AU - Brenner, S. E. AU - Hubbard, T. AU - Chothia, C. PY - 1995 DA - 1995// TI - SCOP: a structural classification of proteins database for the investigation of sequences and structures JO - J Mol Biol VL - 247 ID - Murzin1995 ER - TY - JOUR AU - Bateman, A. AU - Coin, L. AU - Durbin, R. AU - Finn, R. D. AU - Hollich, V. AU - Griffiths-Jones, S. AU - Khanna, A. AU - Marshall, M. AU - Moxon, S. AU - Sonnhammer, E. L. L. AU - Studholme, D. J. AU - Yeats, C. AU - Eddy, S. R. PY - 2004 DA - 2004// TI - The Pfam protein families database JO - Nucleic Acids Res VL - 32 UR - https://doi.org/10.1093/nar/gkh121 DO - 10.1093/nar/gkh121 ID - Bateman2004 ER - TY - JOUR AU - Campagne, S. AU - Saurel, O. AU - Gervais, V. AU - Milon, A. PY - 2010 DA - 2010// TI - Structural determinants of specific DNA-recognition by the THAP zinc finger JO - Nucleic Acids Res VL - 38 UR - https://doi.org/10.1093/nar/gkq053 DO - 10.1093/nar/gkq053 ID - Campagne2010 ER - TY - JOUR AU - Vinson, C. AU - Myakishev, M. AU - Acharya, A. AU - Mir, A. A. AU - Moll, J. R. AU - Bonovich, M. PY - 2002 DA - 2002// TI - Classification of Human B-ZIP Proteins Based on Dimerization Properties JO - Mol Cell Biol VL - 22 UR - https://doi.org/10.1128/MCB.22.18.6321-6335.2002 DO - 10.1128/MCB.22.18.6321-6335.2002 ID - Vinson2002 ER - TY - JOUR AU - Ferguson, S. M. AU - Camilli, P. PY - 2012 DA - 2012// TI - Dynamin, a membrane-remodelling GTPase JO - Nat Rev Mol Cell Biol VL - 13 UR - https://doi.org/10.1038/nrm3266 DO - 10.1038/nrm3266 ID - Ferguson2012 ER - TY - JOUR AU - Amoutzias, G. D. AU - Robertson, D. L. AU - Peer, Y. AU - Oliver, S. G. PY - 2008 DA - 2008// TI - Choose your partners: dimerization in eukaryotic transcription factors JO - Trends Biochem Sci VL - 33 UR - https://doi.org/10.1016/j.tibs.2008.02.002 DO - 10.1016/j.tibs.2008.02.002 ID - Amoutzias2008 ER - TY - JOUR AU - Balakrishnan, M. P. AU - Cilenti, L. AU - Ambivero, C. AU - Goto, Y. AU - Takata, M. AU - Turkson, J. AU - Li, X. S. AU - Zervos, A. S. PY - 2011 DA - 2011// TI - THAP5 is a DNA-binding transcriptional repressor that is regulated in melanoma cells during DNA damage-induced cell death JO - Biochem Biophys Res Commun VL - 404 UR - https://doi.org/10.1016/j.bbrc.2010.11.092 DO - 10.1016/j.bbrc.2010.11.092 ID - Balakrishnan2011 ER - TY - JOUR AU - Parker, J. B. AU - Palchaudhuri, S. AU - Yin, H. AU - Wei, J. AU - Chakravarti, D. PY - 2012 DA - 2012// TI - A Transcriptional Regulatory Role of the THAP11-HCF-1 Complex in Colon Cancer Cell Function JO - Mol Cell Biol VL - 32 UR - https://doi.org/10.1128/MCB.06033-11 DO - 10.1128/MCB.06033-11 ID - Parker2012 ER - TY - JOUR AU - Kosugi, S. AU - Hasebe, M. AU - Matsumura, N. AU - Takashima, H. AU - Miyamoto-Sato, E. AU - Tomita, M. AU - Yanagawa, H. PY - 2009 DA - 2009// TI - Six classes of nuclear localization signals specific to different binding grooves of importin alpha JO - J Biol Chem VL - 284 UR - https://doi.org/10.1074/jbc.M807017200 DO - 10.1074/jbc.M807017200 ID - Kosugi2009 ER - TY - JOUR AU - Clamp, M. PY - 2004 DA - 2004// TI - The Jalview Java alignment editor JO - Bioinformatics VL - 20 UR - https://doi.org/10.1093/bioinformatics/btg430 DO - 10.1093/bioinformatics/btg430 ID - Clamp2004 ER -