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Table IV (C) Water involved in the interaction inside active site cleft of the enzyme-inhibitor complexes

From: Insight to structural subsite recognition in plant thiol protease-inhibitor complexes : Understanding the basis of differential inhibition and the role of water

Papain + ZPACK[30]

Distances in Ã…

Subsites of inhibitor

   

in interaction

(No water mediated interaction

  

was reported)

  

Caricain + ZPACK

  

ZPACK:O13

981:OH2

3.01

P3

ZPACK:O3

396:OH2

3.40

P1

ZPACK:O3

402:OH2

2.25**

P1

Chymopapain + ZPACK

  

ZPACK:O13

341:OH2

3.14

P3

ZPACK:O14

377:OH2

3.07

P3

ZPACK:N11

377:OH2

3.42'

P2

ZPACK:O3

290:OH2

3.28**

P1

Actinidin + ZPACK

  

ZPACK:O13

345:O1

2.84

P3

ZPACK:N6

345:OH2

2.47

P1

ZPACK:O3

366:OH2

2.82**

P1

Calotropin DI + ZPACK

  

ZPACK:O13

1279:OH2

3.20

P3

ZPACK:O13

1346:OH2

3.31

P3

ZPACK:O3

1300:OH2

3.09

P1

  1. Foot notes: Names in Italics are x-ray structures Names in normal font are modelled structures * denotes the interactions found both in x-ray and modeled structure ** denotes water found near oxyanion hole