| Slide values for dinucleotide steps with | ||||||||
---|---|---|---|---|---|---|---|---|---|
 | Minor groove facing the histone octamer | Backbone facing the histone octamer | Major groove facing the histone octamer | ||||||
Step | (Region I) | (Region II) | (Region III) | ||||||
 | BI/BI | BI/BII | BII/BII | BI/BI | BI/BII | BII/BII | BI/BI | BI/BII | BII/BII |
AA/TT | -0.2 (0.4) | 0.3 (0.6) | 1.2 (0.6) | -0.2 (0.4) | 0.0 (0.5) | 1.3 NA | -0.0 (0.2) | 0.1 (0.3) | 0.2 NA |
 | 241 | 67 | 8 | 122 | 21 | 1 | 289 | 55 | 1 |
AG/CT | 0.2 (0.5) | 0.9 (0.4) | 1.3 (0.4) | -0.4 (0.3) | 0.5 NA | NA | 0.2 (0.0) | 0.3 (0.6) | NA |
 | 104 | 119 | 47 | 29 | 2 | 0 | 139 | 38 | 0 |
GA/TC | -0.5 (0.3) | 0.6 (0.7) | 0.5 NA | -0.1 (0.8) | 0.7 (0.7) | 1.2 NA | -0.2 (0.4) | 0.0 (0.3) | 0.4 NA |
 | 82 | 117 | 2 | 73 | 31 | 3 | 153 | 54 | 2 |
GG/CC | 0.3 (0.4) | 0.8 (0.5) | 1.4 (0.5) | 0.1 (0.5) | 0.5 (0.4) | 0.5 NA | -0.3 (0.4) | -0.2 (0.6) | NA |
 | 71 | 150 | 28 | 42 | 16 | 1 | 75 | 13 | 0 |
AC/GT | 0.1 NA | 1.0 NA | NA | -0.5 (0.3) | 0.1 NA | NA | -0.5 (0.4) | 0.1 (0.3) | NA |
 | 1 | 4 | 0 | 59 | 1 | 0 | 271 | 20 | 0 |
AT/AT | -0.7 (0.3) | -0.2 (0.8) | NA | -0.6 (0.2) | -0.4 NA | NA | -0.6 (0.3) | -0.5 (0.3) | NA |
 | 109 | 5 | 0 | 110 | 4 | 0 | 139 | 6 | 0 |
GC/GC | 0.3 (0.5) | 0.9 (0.3) | 1.0 (0.2) | 0.7 (0.3) | 0.7 (0.3) | NA | 0.7 (0.3) | 0.9 NA | NA |
 | 32 | 102 | 12 | 29 | 28 | 0 | 26 | 1 | 0 |
CA/TG | 0.3 (0.3) | 1.1 (0.8) | 2.1 (0.4) | 0.5 (0.4) | 0.9 (0.5) | 2.3 (0.4) | -0.0 (0.6) | 0.5 (0.5) | 1.8 (0.4) |
 | 54 | 65 | 120 | 72 | 82 | 54 | 158 | 99 | 51 |
CG/CG | 1.1 NA | 1.4 (0.3) | 1.5 (0.2) | NA | NA | NA | 0.2 NA | 0.5 NA | NA |
 | 3 | 35 | 10 | 0 | 0 | 0 | 1 | 1 | 0 |
TA/TA | -0.4 (0.3) | -0.2 NA | 2.1 NA | -0.4 (0.4) | 0.2 (0.3) | 0.2 NA | -0.3 (0.5) | 0.3 (0.5) | 0.3 NA |
 | 33 | 2 | 1 | 15 | 16 | 1 | 82 | 29 | 1 |
Overall | -0.1 (0.5) | 0.8 (0.6) | 1.7 (0.6) | -0.2 (0.6) | 0.6 (0.6) | 2.1 (0.5) | -0.2 (0.5) | 0.2 (0.5) | 1.7 (0.6) |
 | 730 | 666 | 228 | 551 | 201 | 60 | 1333 | 316 | 55 |