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Table 1 Estimated kinetic constants for binding of full-length HIV-1 Vpr and C-terminal Vpr peptides to CypA.

From: The Host-Pathogen interaction of human cyclophilin A and HIV-1 Vpr requires specific N-terminal and novel C-terminal domains

Peptide

Amino acid sequence

Model

Kinetic constants

   

K D (μM)

ka 1 (1/Ms)

kd(1/s)

Vpr75-90

GCRHSRIGVTRQRRAR

1:1

0.28 ± 0.27

8.1 ± 6.1 × 104

6.3 ± 4.6 × 10-3

Vpr75-90 (R76Q, V83I, T84I)

GCQ HSRIGII RQRRAR

1:1

4.7 ± 2.6

1.6 ± 0.1 × 104

0.071 ± 0.037

Vpr75-90 (R76Q, V83I, R80A, T84I)

GCQ HSA IGII RQRRAR

1:1

2.7 ± 1.9

4.2 ± 0.8 × 104

0.095 ± 0.061

Vpr75-90 (R80A)

GCRHSA IGVTRQRRAR

1:1

7.5 ± 2.6

3.8 ± 0.6 × 103

0.027 ± 0.005

Vpr69-78

FIHFRIGCRH

 

*

  

Vpr75-84

GCRHSRIGVT

 

*

  

Vpr81-90

IGVTRQRRAR

 

*

  

Vpr87-96

RRARNGASRS

 

*

  

Vpr1-96 (918 RU CypA)

 

BA

 

ka1 = 1.3 ± 1.0 × 104

ka2 = 5.9 ± 1.7 × 10-6

kd1 = 1.8 ± 0.2 × 10-3

kd2 = 6.7 ± 3.8 × 10-4

Vpr1-96 (918 RU CypA)

 

1:1

0.31 ± 0.28

3.2 ± 1.2 × 104

0.007 ± 0.005

Vpr1-96 (180 RU CypA)

 

BA

 

ka1 = 5.8 ± 0.8 × 103

ka2 = 1.6 ± 1.6 × 10-4

kd1 = 0.022 ± 0.025

kd2 = 7.3 ± 4.0 × 10-4

Vpr1-96 (180 RU CypA)

 

1:1

0.32 ± 0.14

1.6 ± 0.6 × 104

4.22 ± 0.4 × 10-3

  1. The data represent mean values ± S.E. of two individual experiments using four different concentrations containing duplicate of one concentration.
  2. *KD not measurable by the Biacore instrument.
  3. 1:1, Langmuir binding
  4. BA, Bivalent analyte