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Table 1 Looplinked peptides sequences of BS 3  crosslinked peptides of Mo-MLV IN NTD and the Cβ distances between modified lysine residues in the generated model

From: Crosslinking and mass spectrometry suggest that the isolated NTD domain dimer of Moloney murine leukemia virus integrase adopts a parallel arrangement in solution

Crosslinking

Peptide 1

Lysine involved

Distance (Å)

Looplinks

TLK88NITETCK95ACAQVNASKS

88 – 95

15.45

 

LGAYDK31TK33K

31 – 33

7.32

 

NITETCK95ACAQVNASK104S

95 – 104

16.15

 

TLK88NITETCK - ACAQVNASK104S

88 – 104

20.74

  1. The distances were defined using SwissPdbViewer program.