Table 5 Performance evaluation of the energy function on ig_structal decoy set
From: Scoring predictive models using a reduced representation of proteins: model and energy definition
Decoy set | PDB id. | rank native | RMSD | Z-score | cc | F.E. |
|---|---|---|---|---|---|---|
ig_structal | 1bbd | 57/61 | 2.1 | 1.4 | 0.11 | 0.0 |
ig_structal | 1bbj | 61/61 | 1.2 | 3.6 | 0.28 | 0.0 |
ig_structal | 1dbb | 57/61 | 1.4 | 1.1 | 0.43 | 0.0 |
ig_structal | 1dfb | 47/61 | 2.0 | 0.4 | 0.48 | 0.0 |
ig_structal | 1dvf | 28/61 | 0.7 | -0.3 | 0.43 | 16.7 |
ig_structal | 1eap | 33/61 | 2.1 | -0.1 | 0.39 | 16.7 |
ig_structal | 1fai | 4/61 | 2.2 | -1.3 | 0.62 | 33.3 |
ig_structal | 1fbi | 61/61 | 1.8 | 6.0 | -0.01 | 16.7 |
ig_structal | 1fgv | 50/61 | 1.4 | 0.8 | 0.48 | 0.0 |
ig_structal | 1fig | 61/61 | 2.0 | 6.1 | -0.03 | 16.7 |
ig_structal | 1flr | 6/61 | 1.9 | -1.1 | 0.49 | 16.7 |
ig_structal | 1for | 59/61 | 2.1 | 2.2 | 0.36 | 0.0 |
ig_structal | 1fpt | 29/61 | 1.7 | -0.2 | 0.51 | 0.0 |
ig_structal | 1frg | 5/61 | 2.1 | -1.5 | 0.37 | 33.3 |
ig_structal | 1fvc | 54/61 | 4.1 | 0.9 | 0.07 | 16.7 |
ig_structal | 1fvd | 13/61 | 1.8 | -0.7 | 0.42 | 0.0 |
ig_structal | 1gaf | 35/61 | 1.7 | 0.1 | 0.43 | 33.3 |
ig_structal | 1ggi | 58/61 | 1.7 | 1.2 | 0.39 | 16.7 |
ig_structal | 1gig | 5/61 | 1.7 | -1.4 | 0.43 | 66.7 |
ig_structal | 1hil | 5/61 | 0.9 | -1.1 | 0.53 | 33.3 |
ig_structal | 1hkl | 25/61 | 1.6 | -0.3 | 0.49 | 16.7 |
ig_structal | 1iai | 51/61 | 1.2 | 1.1 | 0.44 | 33.3 |
ig_structal | 1ibg | 40/61 | 4.1 | 0.3 | 0.14 | 0.0 |
ig-structal | 1igc | 17/61 | 1.0 | -0.6 | 0.49 | 16.7 |
ig_structal | 1igf | 45/61 | 1.8 | 0.4 | 0.50 | 16.7 |
ig_structal | 1igi | 23/61 | 3.3 | -0.4 | 0.34 | 0.0 |
ig_structal | 1igm | 14/61 | 1.5 | -0.8 | 0.52 | 33.3 |
ig_structal | 1ikf | 10/61 | 2.5 | -0.9 | 0.50 | 16.7 |
ig_structal | 1ind | 2/61 | 1.2 | -1.9 | 0.57 | 50.0 |
ig_structal | 1jel | 59/61 | 1.3 | 2.2 | 0.36 | 33.3 |
ig_structal | 1jhl | 46/61 | 2.9 | 0.5 | 0.32 | 33.3 |
ig_structal | 1kem | 16/61 | 2.0 | -0.6 | 0.52 | 16.7 |
ig_structal | 1mam | 39/61 | 2.0 | 0.2 | 0.26 | 16.7 |
ig_structal | 1mcp | 27/61 | 2.1 | -0.3 | 0.27 | 0.0 |
ig_structal | 1mfa | 60/61 | 3.4 | 1.4 | -0.02 | 0.0 |
ig_structal | 1mlb | 55/61 | 1.3 | 0.9 | 0.36 | 16.7 |
ig_structal | 1mrd | 61/61 | 2.9 | 5.3 | -0.21 | 0.0 |
ig_structal | 1nbv | 34/61 | 2.0 | 0.1 | 0.39 | 33.3 |
ig_structal | 1ncb | 55/61 | 1.3 | 1.0 | 0.45 | 33.3 |
ig_structal | 1ngq | 59/61 | 1.5 | 1.8 | 0.27 | 16.7 |
ig_structal | 1nmb | 34/61 | 4.4 | -0.1 | 0.15 | 0.0 |
ig_structal | 1nsn | 61/61 | 2.0 | 3.2 | 0.20 | 16.7 |
ig_structal | 1opg | 49/61 | 1.7 | 0. 6 | 0.46 | 33.3 |
ig_structal | 1plg | 32/61 | 1.5 | -0.2 | 0.57 | 0.0 |
ig_structal | 1rmf | 57/61 | 1.7 | 1.7 | 0.35 | 16.7 |
ig_structal | 1tet | 51/61 | 1.5 | 0.7 | 0.44 | 0.0 |
ig_structal | 1ucb | 18/61 | 1.6 | -0.6 | 0.54 | 33.3 |
ig_structal | 1vfa | 2/61 | 2.7 | -1.6 | 0.33 | 16.7 |
ig_structal | 1vge | 31/61 | 3.9 | -0.0 | 0.10 | 16.7 |
ig_structal | 1yuh | 61/61 | 1.9 | 2.4 | 0.06 | 33.3 |
ig_structal | 2cgr | 49/60 | 1.4 | 0.5 | 0.45 | 16.7 |
ig_structal | 2fb4 | 4/61 | 1.7 | -1.5 | 0.43 | 50.0 |
ig_structal | 2fbj | 20/61 | 1.4 | -0.4 | 0.48 | 0.0 |
ig_structal | 2gfb | 4/61 | 2.0 | -1.5 | 0.40 | 50.0 |
ig_structal | 3hfl | 59/61 | 4.2 | 2.7 | -0.29 | 0.0 |
ig_structal | 3hfm | 59/61 | 1.6 | 1.9 | 0.38 | 0.0 |
ig_structal | 6fab | 29/61 | 1.4 | -0.1 | 0.48 | 0.0 |
ig_structal | 7fab | 57/61 | 2.0 | 1.2 | 0.36 | 33.3 |
ig_structal | 8fab | 44/61 | 5.3 | 0.4 | -0.01 | 0.0 |