Table 8 Performance evaluation of the energy function on lmds decoy set
From: Scoring predictive models using a reduced representation of proteins: model and energy definition
Decoy set | PDB id. | rank native | RMSD | Z-score | cc | F.E. |
|---|---|---|---|---|---|---|
lmds | 1b0n-B | 1/498 | 0.0 | -3.3 | 0.05 | 18.4 |
lmds | 1bba | 501/501 | 4.5 | 21.4 | -0.23 | 10.0 |
lmds | 1ctf | 1/498 | 0.0 | -3.4 | 0.31 | 2.0 |
lmds | 1dtk | 2/216 | 6.3 | -2.5 | 0.21 | 33.3 |
lmds | 1fc2-C | 53/501 | 5.4 | -1.3 | 0.17 | 24.0 |
lmds | 1igd | 1/501 | 0.0 | -4.0 | 0.10 | 6.0 |
lmds | 1shf-A | 1/438 | 0.0 | -5.3 | 0.11 | 11.6 |
lmds | 2cro | 1/501 | 0.0 | -7.7 | 0.13 | 20.0 |
lmds | 2ovo | 1/348 | 0.0 | -3.2 | 0.11 | 5.9 |
lmds | 4pti | 1/344 | 0.0 | -3.5 | 0.02 | 14.7 |