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Table 4 Structurally similar helical ranges of unknown PF01036-structures

From: The observation of evolutionary interaction pattern pairs in membrane proteins

 

D5H9B4_SALRM

  

Q9HH34_HALSI

  

BACR1_HALSS

 

Helix

Amino acids

Similarity

Helix

Amino acids

Similarity

Helix

Amino acids

Similarity

1

23

95.6%

1

23

82.6%

1

23

73.9%

2

20

95%

2

23

91.3%

2

23

78.2%

3

18

88%

3

23

95.6%

3

23

0%

4

18

100%

4

23

86.9%

4

20

90%

5

23

91.3%

5

20

100%

5

20

70%

6

23

95.6%

6

23

91.3%

6

23

69.5%

7

23

73.9%

7

23

86.9%

7

23

82.6%

  1. For each Bacteriorhodopsin-like protein, the number of amino acids of individual TMHMM predicted helices are given. Similarity values describe consistent helical ranges, which are covered by EIPPs.