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Table 1 Mean r.m.s.d. values of the models and their standard deviations (Å) over the last 8 ns of the runs

From: Molecular dynamics simulation of the opposite-base preference and interactions in the active site of formamidopyrimidine-DNA glycosylase

 

PRN-GLH

PRN-GLU

PRO-GLH

PRO-GLU

 

Global

oxoG:C

1.50 ± 0.06

1.58 ± 0.07

1.69 ± 0.07

1.51 ± 0.05

oxoG:A(anti)

1.75 ± 0.05

1.43 ± 0.06

1.66 ± 0.06

1.45 ± 0.06

oxoG:A(syn)

1.68 ± 0.06

1.53 ± 0.06

1.41 ± 0.06

1.74 ± 0.06

 

Active site

oxoG:C

1.37 ± 0.10

1.55 ± 0.08

1.60 ± 0.13

1.58 ± 0.11

oxoG:A(anti)

1.89 ± 0.06

1.57 ± 0.08

2.16 ± 0.06

1.86 ± 0.07

oxoG:A(syn)

1.66 ± 0.12

1.61 ± 0.06

1.44 ± 0.10

1.92 ± 0.13