From: QRNAS: software tool for refinement of nucleic acid structures
RNA-Puzzles #1 models | RMSD [Ã…] | INF_all | INF_nWC | Clashscore | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
starting | QRNAS | RNAfitme | sander | starting | QRNAS | RNAfitme | sander | starting | QRNAS | RNAfitme | sander | starting | QRNAS | RNAfitme | sander | |
1_bujnicki_1 | 5.70 | 5.63 | 5.60 | 5.63 | 0.825 | 0.778 | 0.522 | 0.787 | 0.750 | 0.750 | 0.866 | 0.750 | 0.00 | 0.00 | 0.00 | 0.00 |
1_bujnicki_2 | 6.13 | 5.98 | 5.93 | 5.97 | 0.776 | 0.774 | 0.496 | 0.736 | 0.289 | 0.671 | 0.500 | 0.289 | 61.25 | 1.40 | 18.91 | 60.88 |
1_bujnicki_3 | 5.28 | 5.24 | 5.22 | 5.23 | 0.796 | 0.761 | 0.483 | 0.750 | 0.707 | 0.408 | 0.866 | 0.707 | 48.21 | 2.10 | 10.81 | 48.32 |
1_bujnicki_4 | 4.94 | 4.87 | 4.84 | 4.84 | 0.703 | 0.654 | 0.357 | 0.652 | 0.250 | 0.378 | 0.354 | 0.250 | 69.06 | 0.70 | 14.86 | 70.22 |
1_bujnicki_5 | 5.11 | 4.91 | 4.95 | 5.01 | 0.701 | 0.664 | 0.376 | 0.656 | 0.378 | 0.333 | 0.378 | 0.378 | 66.30 | 2.10 | 23.65 | 68.12 |
1_chen_1 | 4.34 | 4.32 | 4.31 | 4.38 | 0.901 | 0.809 | 0.457 | 0.789 | 0.000 | 0.577 | 0.289 | 0.000 | 0.00 | 0.00 | 0.00 | 0.00 |
1_das_1 | 3.96 | 4.06 | 4.08 | 4.06 | 0.812 | 0.812 | 0.499 | 0.812 | 0.671 | 0.671 | 0.577 | 0.671 | 2.80 | 0.00 | 0.00 | 2.80 |
1_das_2 | 4.46 | 4.46 | 4.48 | 4.45 | 0.778 | 0.769 | 0.499 | 0.778 | 0.500 | 0.671 | 0.750 | 0.500 | 3.50 | 0.00 | 0.00 | 4.20 |
1_das_3 | 3.42 | 3.48 | 3.50 | 3.48 | 0.843 | 0.851 | 0.522 | 0.843 | 0.894 | 0.894 | 0.750 | 0.894 | 2.80 | 0.00 | 0.00 | 4.20 |
1_das_4 | 3.91 | 4.12 | 4.12 | 4.11 | 0.819 | 0.818 | 0.522 | 0.819 | 0.816 | 0.816 | 0.816 | 0.816 | 2.80 | 0.00 | 0.00 | 2.80 |
1_das_5 | 4.56 | 4.80 | 4.79 | 4.79 | 0.743 | 0.750 | 0.480 | 0.743 | 0.750 | 0.577 | 0.577 | 0.750 | 2.80 | 0.00 | 0.00 | 2.80 |
1_dokholyan_1 | 7.18 | 7.12 | 7.10 | 7.13 | 0.785 | 0.720 | 0.503 | 0.737 | 0.671 | 0.500 | 0.500 | 0.671 | 26.15 | 0.00 | 10.13 | 26.59 |
1_major_1 | 4.32 | 4.47 | 4.48 | 4.43 | 0.885 | 0.814 | 0.522 | 0.770 | 0.577 | 0.866 | 0.866 | 0.577 | 54.99 | 2.78 | 14.19 | 51.89 |
1_santalucia_1 | 5.75 | 5.46 | 5.41 | 5.43 | 0.864 | 0.776 | 0.510 | 0.755 | 0.577 | 0.577 | 0.577 | 0.577 | 25.07 | 0.00 | 8.78 | 21.71 |
average | 4.93 | 4.92 | 4.92 | 4.92 | 0.802 | 0.768 | 0.482 | 0.759 | 0.559 | 0.621 | 0.619 | 0.559 | 26.12 | 0.65 | 7.24 | 26.04 |