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Table 3 Homodimeric interfaces of E glycoprotein

From: Prediction of protein-protein interactions in dengue virus coat proteins guided by low resolution cryoEM structures

Interacting chains

Immature at neutral pH (3C6D)*

Immature at acidic pH (3C6R)#

Mature at neutral pH (1P58)

AB

A245 (7.8; h)

P80 (6.1; h),

G223 (3.2; m),

D225 (7.0; h)

E133 (1.7; l),

P166 (7.5; h),

S169 (3.2; m),

R188 (6.5; h)

AC

-

-

G78 (3.8; m),

P80 (3.8; m),

Q86 (2.0; l),

L221 (6.1; h),

P222 (7.5; h),

G228 (3.7; m),

N230 (7.2; h)

BA

-

L56 (8.5; h),

G78 (3.7; m),

V129 (7.9; h),

R210 (3.4; m),

P222 (7.6; h)

L389 (8.5; h),

D390 (7.2; h),

W391 (6.9; h)

BC

-

G5 (7.4; h),

G100 (7.4; h),

F108 (7.3; h),

V151 (7.9; h),

G152 (7.4; h),

L253 (7.5; h),

G258 (7.4; h),

T315 (7.3; h)

G100 (7.4; h),

G102 (7.4; h),

F108 (7.3; h),

G258 (7.1; h)

CA

-

L389 (6.2; h)

G78 (5.6; m),

L221 (6.3; h),

P222 (7.5; h),

A224 (4.1; m),

G228 (7.1; h),

N230 (7.3; h)

CB

-

G5 (7.4; h),

G100 (7.4; h),

F108 (7.3; h),

V151 (7.9; h),

G152 (7.4; h),

L253 (7.5; h),

G258 (7.4; h),

T315 (7.3; h)

G100 (7.4; h),

G102 (7.5; h),

F108 (7.4; h),

G258 (7.4; h)

 

* Interacting chains are arranged in parallel

# Interacting chains are arraged end-to-end

 
  1. List of residues of E glycoprotein chains (A, B and C) participating in the interactions amongst themselves. The residues listed in every column belong to the fist chain in the pair of chains listed; confidence scores are given in the brackets where "h" stands for high, "m" for medium while "l" for low confidence.