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Table 5 Ranking ZDOCK2.3 decoys (IRMSD ≤2.5Å) by the jackknife test

From: Designing coarse grained-and atom based-potentials for protein-protein docking

Complex Ranka
  ADPs-II b Zdock2.3
1B6C 311 168
1BVK - -
1DQJ - -
1EWY 754 113
1IJK 1131 -
1AVX 955 449
1D6R - -
1E96 326 399
1F34 - 26
1GCQ - -
1GRN 492 807
1KXP 381 7
1NSN - 445
1SBB - -
1AKJ - 96
1AY7 236 -
1DFJ 720 1
1EAW 152 13
1I9R 329 90
1UDI 386 13
2PCC - -
1AHW 23 56
1BUH 16 -
1E6E 2 103
1ML0 10 1
1PPE 3 1
1QFW 1080 74
1TMQ 9 126
1WEJ 3 102
2JEL 307 86
7CEI 42 1
1BJ1 6 18
1CGI - -
1F51 1 11
1KAC - 1523
1NCA 4 4
1QA9 - -
2SNI 17 -
1RLB 48 302
Top10 8 (20.5%) 6 (15.4%)
  1. a-Rank of the lowest energy near-native decoy with IRMSD ≤2.5Å out of 54000 predictions.
  2. b-Jackknife test (see Methods)
  3. --No near-native decoy identified among the 2000 best ranked decoys.