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Table 3 Energetics of Complexes.

From: Investigating dynamic and energetic determinants of protein nucleic acid recognition: analysis of the zinc finger zif268-DNA complexes

PDB Code

Protein-Protein

Protein-DNA

DNA-DNA

Total Stabilization Energy

Intra-protein

1A1F

-58,47

-414,60

-734,92

-1207,99

-513,38

1A1G

-64,77

-432,7

-722,54

-1220,01

-390,68

1A1I

-65,75

-433,5

-714,52

-1213,77

-367,53

1A1J

-66,12

-438,35

-726,55

-1231,02

-440,24

1A1K

-61,61

-423,81

-728,83

-1214,25

-137,19

1A1L

-89,11

-501,37

-705,23

-1295,71

-210,41

1AAY

-64,44

-432,67

-726,34

-1223,45

-342,07

  1. Energetic contributions calculated according to the Energy Decomposition Method due to intraprotein, protein-DNA and intra-DNA contributions are indicated. The last column expresses intra-protein stabilization energy calculated only on the proteins, in the presence of the respective DNA. All the energetic values are in Kcal/mol