Table 3 The overlaps and correlations between the observed conformation changes and the most involved modes using different models and the open conformations
From: Generalized spring tensor models for protein fluctuation dynamics and conformation changes
Protein | Overlap in ANM | Correlation in ANM | Overlap in STeM | Correlation in STeM |
|---|---|---|---|---|
Adenylate kinase | 0.49(1) | 0.62(1) | 0.55(1) | 0.63 (1) |
Alcohol dehydrogenase | 0.69(3) | 0.54(9) | 0.73 (2) | 0.65 (30) |
Annexin V | 0.33(1) | 0.60(32) | 0.33 (1) | 0.56 (22) |
Aspartate aminotransferase | 0.56(9) | 0.63(9) | 0.68 (6) | 0.67 (6) |
Calmodulin | 0.44(5) | 0.62 (77) | 0.48 (1) | 0.62 (16) |
Che Y protein | 0.46(1) | 0.78(12) | 0.40(1) | 0.74(1) |
Citrate synthase | 0.48(7) | 0.72(26) | 0.49(5) | 0.63(5) |
Dihydrofolate reductase | 0.71(1) | 0.65(1) | 0.73(1) | 0.66(1) |
Diphtheria toxin | 0.43(1) | 0.69(2) | 0.50(2) | 0.73(2) |
Enolase | 0.31(1) | 0.45(34) | 0.32(1) | 0.49(53) |
HIV-1 protease | 0.67(1) | 0.78 (10) | 0.85 (1) | 0.90(1) |
Immunoglobulin | 0.68(3) | 0.57(3) | 0.66(3) | 0.58(3) |
Lactoferrin | 0.48(1) | 0.64(24) | 0.48(1) | 0.70(36) |
LAO binding protein | 0.81(1) | 0.74(1) | 0.87(1) | 0.80(1) |
Maltodextrin binding protein | 0.77(2) | 0.66(2) | 0.80(2) | 0.70(2) |
Seryl-tRNA synthetase | 0.21(4) | 0.59(10) | 0.21(4) | 0.60(37) |
Thymidylate synthase | 0.37(4) | 0.69(9) | 0.44(3) | 0.68(9) |
Triglyceride lipase | 0.35(15) | 0.50(25) | 0.30(14) | 0.56(24) |
Triose phosphate isomerase | 0.15(38) | 0.28(11) | 0.14(7) | 0.30(8) |
Tyrosine phosphatase | 0.41(2) | 0.57(27) | 0.42(1) | 0.59(25) |