Table 6 Total number of datapoints for each dinucleotide step for which the values of tilt or roll lie beyond 3σ of the mean values for these parameters for the free B-DNA dataset, used by Marathe et al. [25]
| Â | Number of kinks of dinucleotide steps with | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| Â | Minor groove facing the histone octamer | Backbone facing the histone octamer | Major groove facing the histone octamer | ||||||
Step | (Region I) | (Region II) | (Region III) | ||||||
| Â | BI/BI | BI/BII | BII/BII | BI/BI | BI/BII | BII/BII | BI/BI | BI/BII | BII/BII |
AA/TT | 4 (1.7) | 10 (14.9) | 4 (50.0) | 3 (2.5) | 3 (14.3) | 1 (100.0) | 12 (4.2) | 3 (5.5) | 0 (0.0) |
AG/CT | 5 (4.8) | 6 (5.0) | 4 (8.5) | 2 (6.9) | 2 (100.0) | NA | 26 (18.7) | 4 (10.5) | NA |
GA/TC | 2 (2.4) | 13 (11.1) | 0 (0.0) | 7 (9.6) | 3 (9.7) | 1 (33.3) | 11 (7.2) | 6 (11.1) | 0 (0.0) |
GG/CC | 1 (1.4) | 27 (18.0) | 14 (50.0) | 11 (26.2) | 3 (18.8) | 0 (0.0) | 20 (26.7) | 5 (38.5) | NA |
AC/GT | 0 (0.0) | 0 (0.0) | NA | 1 (1.7) | 0 (0.0) | NA | 7 (2.6) | 3 (15.0) | NA |
AT/AT | 0 (0.0) | 0 (0.0) | NA | 0 (0.0) | 1 (25.0) | NA | 4 (2.9) | 0 (0.0) | NA |
GC/GC | 3 (9.4) | 6 (5.9) | 2 (16.7) | 1 (3.4) | 1 (3.6) | NA | 3 (11.5) | 0 (0.0) | NA |
CA/TG | 1 (1.9) | 7 (10.8) | 62 (51.7) | 7 (9.7) | 7 (8.5) | 13 (24.1) | 41 (25.9) | 13 (13.1) | 3 (5.9) |
CG/CG | 0 (0.0) | 0 (0.0) | 0 (0.0) | NA | NA | NA | 0 (0.0) | 0 (0.0) | NA |
TA/TA | 0 (0.0) | 0 (0.0) | 1 (100.0) | 0 (0.0) | 0 (0.0) | 0 (0.0) | 11 (13.4) | 10 (34.5) | 0 (0.0) |
Overall | 16 (2.2) | 69 (10.4) | 87 (38.2) | 32 (5.8) | 20 (10.0) | 15 (25.0) | 135 (10.1) | 44 (13.9) | 3 (5.5) |