Table 3 Conformations of the unpaired RNA nucleotide examined in the present paper and corresponding hydration of the bases
From: Hydration sites of unpaired RNA bases: a statistical analysis of the PDB structures
Base | Nucleotide conformations containing more than 15 surrounding waters | Number of nucleotides | Number of surrounding waters |
|---|---|---|---|
Adenine | C3'-endo_anti_-g_t_g_g_t_-g | 56 | 273 |
Adenine | C3'-endo_anti_t_t_t_g_t_-g | 7 | 77 |
Adenine | C3'-endo_anti_t_t_g_g_t_-g | 7 | 27 |
Adenine | C2'-exo_anti_-g_t_g_g_t_-g | 6 | 20 |
Adenine | C3'-endo_anti_-g_t_t_g_t_-g | 2 | 20 |
Guanine | C3'-endo_anti_-g_t_g_g_t_-g | 43 | 193 |
Guanine | C2'-endo_anti_-g_t_g_t_-g_g | 12 | 29 |
Guanine | C2'-endo_anti_-g_t_g_t_-g_t | 3 | 18 |
Guanine | C3'-endo_anti_-g_t_g_g_-g_-g | 7 | 17 |
Uracil | C3'-endo_anti_-g_t_g_g_t_-g | 10 | 55 |
Uracil | C2'-endo_anti_g_t_g_t_-g_-g | 7 | 34 |
Uracil | C3'-endo_anti_t_t_t_g_t_-g | 4 | 29 |
Uracil | C2'-endo_anti_-g_t_g_t_-g_g | 4 | 18 |
Uracil | C3'-endo_anti_t_t_g_g_t_-g | 4 | 17 |
Cytosine | C3'-endo_anti_-g_t_g_g_t_-g | 20 | 114 |
Cytosine | C2'-endo_anti_-g_t_g_t_-g_-g | 3 | 17 |
Cytosine | C3'-endo_anti_t_t_t_g_t_g | 2 | 17 |
Cytosine | C3'-endo_anti_-g_t_g_g_t_g | 4 | 16 |