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Table 1 List of homologous enzymes used in this study

From: Comparative void-volume analysis of psychrophilic and mesophilic enzymes: Structural bioinformatics of psychrophilic enzymes reveals sources of core flexibility

Psychrophilic Protein

Mesophilic Protein

 

PDB

   

PDB

   

Source Organism

Code

Resolution

Growth (°C)

Source Organism

Code

Resolution (Å) %

Identity

Classification

Salmo salar

1a0j

1am

1.7

4

Streptomyces griseus

1sgt

1.7

33

Serine Protease

Gadus morhua

5

2.16

10

Homo sapiens

1qrp

1.96

59

Aspartyl Protease

Alteromonas haloplanctis

1aqh

2

4

Sus scrofa

1pif

2.3

46

Hydrolase

Antarctic bacterium ds2-3r

1a59

2.09

5

Escherichia coli

1k3p

2.2

30

Citrate Synthase

Aquaspirillum arcticum

1b8p

1.9

4

Sus scrofa Acidaminococcus

5mdh

2.4

50

Oxidoreductase

Lactobacillus casei

1dxy

1.9

15

fermentans

1 × dw

1.98

33

Oxidoreductase

Salmo salar

1elt

1.61

4

Sus scrofa

1eai

2.4

68

Serine Protease

Pseudomonas sp.

1g9k

1.96

10

Pseudomonas aeruginosa

1kap

1.64

50

Hydrolase

Bacillus megaterium

1gco

1.7

10

Bacillus anthracis

2uvd

2.4

38

Oxidoreductase

Pandalus borealis

1k7h

1.92

5

Homo sapiens

1zeb

1.9

41

Hydrolase

Arthrobacter sp.

1kfw

1.74

5

Bacillus circulans

litx

1.1

33

Hydrolase

Lactobacillus brevis

1n × q

1.79

15

Mycobacterium tuberculosis

lnff

1.8

40

Oxidoreductase

Gadus morhua

1okb

1.9

10

Homo sapiens

1akz

1.57

76

Hydrolase Fumarate

Shewanella frigidimarina

1qjd

1.8

20

Shewanella putrefaciens

1d4d

2.5

61

Reductase

Bacillus globisporus

1s3g

2.25

15

Bacillus subtilis

2ori

1.8

68

Transferase

Vibrio sp. pa-44

1sh7

1.84

19

Bacillus pumilus

1mee

2

39

Hydrolase

Pseudoalteromonas

        

haloplanktis

1tvn

1.4

20

Erwinia chrysanthemi

1egz

2.3

63

Hydrolase

Serratia sp.

2b6n

1.8

4

Bacillus lentus

1ndu

1.6

37

Hydrolase

Antarctic bacilli

2gko

1.4

5

Bacillus clausii ksm-k16 Chromobacterium

1wsd

1.5

45

Hydrolase

Colwellia psychrerythraea 34h

2v27

1.5

10

violaceum

1ltu

1.74

34

Oxidoreductase

  1. Dataset of 20 psychrophilic/mesophilic protein pairs, PDB code, species name, and structure resolution are provided.
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BMC Structural Biology

ISSN: 1472-6807

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