Figure 7
From: Deciphering the shape and deformation of secondary structures through local conformation analysis
Deformation between regular and non-regular secondary structures. A) The structural superimposition of the EGF1 and EGF2 domains of the light chain of the coagulation factor VIIa in unbound (orange) and bound (green) states. B) The alignment of the structural sequences associated with the bound and unbound states of the protein is presented, | stands for identities, * for transitions between structural letters of the same secondary structure type, ? for transitions involving border-letters. The three deformed regions that do not fit the deformation tendencies are underlined in black. B and D) Zoom on the linker region (B) and region close to linker region (D) that undergo deformations that violate the deformation tendencies, the corresponding structural sequences are shown.