From: Exploring the binding of BACE-1 inhibitors using comparative binding energy analysis (COMBINE)
Compound Number | Pdb ID | Ligand | RMSD(Ã…)a | RMSD(Ã…)b | RMSD(Ã…)c | pIC50d | pIC50e | pIC50f |
---|---|---|---|---|---|---|---|---|
1 | 1 W51 | L01 | 0.36 | 0.36 | 0.645 | 6.7 | 7.337 | 6.72 |
2 | 1TQF | 32P | 0.328 | 0.409 | 3.608 | 5.857 | 8.627 | 8.23 |
3 | 1YM2 | AUA | 0.38 | 0.348 | 0.95 | 8.0 | 7.617 | 8.34 |
4 | 1YM4 | AMK | 0.305 | 0.485 | 2.24 | 7.41 | 7.74 | 7.38 |
5 | 2B8V | 3BN | 0.416 | 0.47 | 1.739 | 7.01 | 7.27 | 7.28 |
6 | 2F3E | AXQ | 0.27 | 0.242 | 0.676 | 6.81 | 7.23 | 7.26 |
7 | 2F3F | AXF | 0.27 | 0.344 | 1.445 | 6.72 | 6.69 | 6.98 |
8 | 2IQG | F2I | 0.398 | 0.404 | 0.846 | 8.3 | 7.72 | 7.55 |
9 | 2IRZ | I02 | 0.401 | 0.354 | 2.219 | 7.92 | 8.08 | 7.24 |
10 | 2IS0 | I03 | 0.483 | 0.556 | 2.184 | 6.7 | 8.05 | 7.42 |
11 | 2OAH | QIN | 0.857 | 0.525 | 2.145 | 7.96 | 7.7 | 7.61 |
12 | 2OHL | 2AQ | 0.144 | 0.192 | 0.08 | 2.7 | 3.51 | 3.01 |
13 | 2OHM | 8AP | 0.36 | 0.468 | 1.524 | 3.51 | 4.12 | 4.06 |
14 | 2OHP | 6IP | 0.576 | 0.535 | 2.432 | 4.03 | 4.34 | 4.22 |
15 | 2OHQ | 7IP | 0.35 | 0.501 | 1.29 | 4.6 | 5.15 | 4.27 |
16 | 2OHR | 8IP | 0.297 | 0.359 | 2.428 | 5.0 | 4.74 | 4.45 |
17 | 2OHS | 9IP | 0.256 | 0.314 | 2.438 | 5.4 | 5.06 | 5.33 |
18 | 2OHT | IP6 | 0.455 | 0.464 | 1.743 | 5.04 | 4.6 | 5.13 |
19 | 2OHU | IP7 | 0.906 | 0.942 | 1.921 | 5.38 | 5.06 | 4.87 |
20 | 2P83 | MR0 | 0.345 | 0.363 | 1.903 | 7.96 | 7.54 | 7.28 |
21 | 2PH6 | 712 | 0.371 | 0.563 | 3.184 | 7.57 | 7.97 | 7.58 |
22 | 2B8L | 5HA | 0.316 | 0.433 | 2.51 | 8.0 | 8.12 | 7.72 |
23 | 2QZL | IXS | 0.41 | 0.4 | 2.122 | 8.1 | 8.68 | 8.37 |
24 | 2ZE1 | 411 | 0.825 | 0.851 | 0.946 | 5.25 | 5.21 | 5.56 |
25 | 2QP8 | SC7 | 0.355 | 0.342 | 0.652 | 8.15 | 7.61 | 8.13 |
26 | 2VIE | VG0 | 0.396 | 0.52 | 1.705 | 7.48 | 7.58 | 7.77 |
27 | 2VJ7 | VG6 | 0.765 | 0.692 | 2.0 | 7.31 | 7.3 | 7.46 |
28 | 2VJ9 | VG7 | 0.413 | 0.475 | 1.094 | 6.74 | 7.25 | 7.21 |
29 | 2VNM | CM8 | 0.387 | 0.572 | 2.457 | 8.52 | 8.09 | 8.3 |
30 | 2VNN | CM7 | 0.366 | 0.333 | 1.58 | 8.7 | 8.0 | 8.38 |
31 | 2WF0 | ZY0 | 0.51 | 0.527 | 1.133 | 6.68 | 7.25 | 7.54 |
32 | 2WF1 | ZY1 | 0.377 | 0.361 | 2.342 | 8.7 | 8.19 | 8.41 |
33 | 2ZDZ | 310 | 0.871 | 0.901 | 1.642 | 6.15 | 5.57 | 5.95 |
34 | 2FDP | FRP | 0.415 | 0.428 | 2.18 | 7.59 | 7.13 | 7.0 |
35 | 3CIB | 314 | 0.343 | 0.355 | 0.558 | 7.85 | 7.58 | 7.99 |
36 | 3CIC | 316 | 0.308 | 0.291 | 2.565 | 8.52 | 7.62 | 8.37 |
37 | 3CID | 318 | 0.336 | 0.356 | 0.816 | 8.3 | 7.64 | 8.37 |
38 | 3DM6 | 757 | 0.659 | 0.716 | 2.814 | 7.43 | 8.57 | 7.88 |
39 | 3DUY | AFJ | 0.443 | 0.653 | 1.749 | 5.85 | 6.78 | 6.1 |
40 | 3DV1 | AR9 | 0.267 | 0.251 | 0.608 | 6.23 | 6.61 | 6.37 |
41 | 2P4J | 23I | 0.614 | 0.645 | 4.611 | 8.96 | 8.55 | 8.15 |
42 | 3FKT | SII | 0.596 | 0.723 | 1.749 | 5.55 | 4.76 | 6.22 |
43 | 2QK5 | CS5 | 0.405 | 0.392 | 2.416 | 7.7 | 7.63 | 7.99 |
44 | 1XS7 | MMI | 0.628 | 0.604 | 1.37 | 7.59 | 7.2 | 6.47 |
45 | 1FKN | OM99-2 | 1.262 | 1.56 | 3.3 | 8.8 | 8.58 | 9.03 |
46 | 1M4H | OM00-3 | 1.137 | 1.68 | 3.9 | 9.51 | 9.24 | 9.3 |