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Table 6 Evaluation of the SOM distance with the RDFs for the prediction of enzyme function of oxidoreductases

From: Exploring functionally related enzymes using radially distributed properties of active sites around the reacting points of bound ligands

Dataset*

AUC

 

SOM distance

SiteEngine

Alignment

MAMMOTH

0.746

0.410

0.415

Needleman-Wunsch

0.729

0.558

0.654

Smith-Waterman

0.744

0.541

0.471

  1. *The datasets were created by culling the pairs with greater than 25% pairwise identity. The SOM was run using an RDF with an Epanechnikov neighborhood function in a [46, 28]-sized rectangular lattice.
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BMC Structural Biology

ISSN: 1472-6807

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