Table 4 Results of normal mode analysis for proteins with ‘non-interacting regions with PB change’
PDBcode | Region of interest | Mobile/Rigid? | Whole/Embedded | Mode |
|---|---|---|---|---|
Cases with substantial change in non-interacting residues whereas interacting region has very less change | ||||
2HQS:A | Interface region | Highly mobile | Whole | 5 |
NIR_PBc far away (mainly 86-91) | Highly mobile | Whole | 3 | |
1GHQ:A | Interface region | Highly mobile | Whole | 1 |
NIR_PBc far away (264-274) | Partially mobile | Embedded | 1 | |
1OPH:A | Interface region | Highly mobile | Whole | 1 |
NIR_PBc far away (120-123) | Mobile | Embedded | 1 | |
NIR_PBc near interface (191-194) | Mobile | Embedded | 1 | |
1KXP:D | Interface region | Rigid | - | - |
NIR_PBc far away (314-325) | Low mobility | Embedded | 1 | |
NIR_PBc near interface (250-258) | Rigid | - | - | |
2BTF:A | Interface region | Rigid | - | - |
NIR_PBc far away (156-158) | Rigid | - | - | |
1XD3:A | Interface region | Partly mobile | Embedded | 2 |
NIR_PBc near interface (89-93) | Rigid | - | - | |
1BVK:F | Interface region | Partly mobile | Whole | 1 |
NIR_PBc with interface (100-105) | Mobile | Embedded | 2 | |
1B6C:B | Interface region | Rigid | - | - |
NIR_PBc near interface (15-22) | Mobile | Whole | 3 | |
NIR_PBc near interface (152-157) | Mobile | Embedded | 4 | |
Cases with substantial change in non-interacting residues near interacting region as well as in interacting region | ||||
1I2M:A | Interface region | Rigid | - | - |
NIR_PBc far away (145-149) | Mobile | Embedded | 4 | |
NIR_PBc near interface (32-29) | Partly mobile | Embedded | 2 | |