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Table 3 Summary of data collection, MAD structure solution, and refinement statistics

From: Crystal structure of putative CbiT from Methanocaldococcus jannaschii: an intermediate enzyme activity in cobalamin (vitamin B12) biosynthesis

 

Se-Met peak

Se-Met inflection

Se-Met remote

Data collection

   

Wavelength (Å)

0.97891

0.97928

0.90000

Space group

P 41212

  

Unit cell (Å)

a = b = 93.44, c = 81.04

  

Resolution (Å) 1

50.00–2.2 (2.28–2.20)

  

Completeness (%)

96.6 (78.7)

98.6 (89.6)

99.3 (93.4)

Redundancy

12.2 (8.3)

12.8 (9.4)

13.0 (9.2)

Average I / σ(I)

27.4 (1.9)

30.3 (2.2)

33.7 (2.3)

Rmerge (%)2

9.1 (42.0)

7.9 (43.3)

7.6 (46.9)

MAD solution

   

Resolution cutoff (Å)

2.5

  

No. Se-sites found

6 (of 8)

  

Mean FOM

0.62

  

Overall Z-score

24.3

  

Refinement statistics

   

No. molecules in a.u.

2 molecules

  

Resolution limit (Å)

20–2.3

  

R-factor/Rfree (%)3,4

19.8 / 27.3

  

Mean B factor (Å2)

49.0

  

No. protein residues

360

  

No. MES molecules

1

  

No. SO4 molecules

2

  

No. water molecules

108

  

r.m.s. deviations

   

Bond lengths (Å)

0.013

  

Bond angles (o)

1.54

  
  1. 1Numbers in parentheses are values in the highest resolution shell.
  2. 2Rmerge = Σ |Iobs - <I>| / Σ <I> summed over all observations and reflections.
  3. 3Rcryst = Σ ||Fobs| – |Fcalc|| / Σ |Fobs|.
  4. 4Rfree was calculated with 5% of data omitted from refinement.