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Table 4 Performance of the method on ten proteins (cf. Table 3)

From: Modeling protein conformational transitions by a combination of coarse-grained normal mode analysis and robotics-inspired methods

Protein

C α -RMSD end

Iterations

Time RRT

Time total

ADK

1.56

31

1.82

2.00

LAO

1.32

20

1.52

1.65

DAP

1.31

16

1.78

1.92

NS3

1.29

14

2.82

3.00

DDT

2.88

272

81.54

86.4

GroEL

2.79

142

40.21

42.17

ATP

1.45

30

13.46

14.16

LTF

1.96

74

29.56

31.09

IBS

1.99

80

80.61

82.62

HKC

1.64

38

37.91

39.63

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BMC Structural Biology

ISSN: 1472-6807

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