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Table 2 MAR statistics for 23 pseudoknotted sequences

From: Enhancement of accuracy and efficiency for RNA secondary structure prediction by sequence segmentation and MapReduce

Cut

Regular

 

Centered

 

Optimized

Prediction

Mean

Stdev

p

Mean

Stdev

p

Mean

Stdev

p

IPknot

1.19

0.48

0.037

1.33

0.62

0.009

1.40

0.64

0.004

pknotsRG

1.21

0.84

0.116

1.39

0.99

0.036

1.48

1.00

0.016

HotKnots

1.11

0.41

0.098

1.32

0.71

0.021

1.43

0.80

0.009

NUPACK

0.93

0.18

0.955

1.14

0.39

0.071

1.17

0.35

0.032

PKNOTS

1.16

0.20

0.003

1.29

0.26

0.000

1.38

0.29

0.000

  1. Mean and standard deviations of MAR for regular, centered, and optimized chunking methods over 23 pseudoknotted sequences, and the corresponding p-values of the t-test for mean MAR > 1.
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BMC Structural Biology

ISSN: 1472-6807

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