Enhancement of accuracy and efficiency for RNA secondary structure prediction by sequence segmentation and MapReduce

Table 3 MAR correlation coefficients (r) and p-values (p)

		Non-pseudoknotted sequences			Pseudoknotted sequences
Prediction		R	C	O	R	C	O
IPknot	r	-0.2077	-0.2141	-0.1629	0.1379	0.1572	0.0841
	p	0.1478	0.1354	0.2582	0.5303	0.4738	0.7028
pknotsRG	r	-0.1550	-0.0670	-0.0756	0.2030	0.1971	0.1987
	p	0.2825	0.6437	0.6018	0.3528	0.3673	0.3634
HotKnots	r	-0.1434	-0.0476	-0.0732	-0.0360	-0.0669	-0.0855
	p	0.3204	0.7428	0.6136	0.8705	0.7618	0.6982
NUPACK	r	-0.1622	-0.0137	-0.0059	-0.0532	0.0666	-0.1331
	p	0.2604	0.9249	0.9676	0.8340	0.7928	0.5986
PKNOTS	r	0.4598	0.7053	0.7045	-0.0233	0.1001	0.0597
	p	0.0008	0.0000	0.0000	0.9294	0.7023	0.8199
UNAFold	r	-0.1449	-0.1055	-0.1311
	p	0.3155	0.4658	0.3643
RNAfold	r	-0.1056	-0.0646	-0.0538
	p	0.4654	0.6559	0.7104

Correlation coefficients (r) between MAR and sequence lengths and corresponding p-values (p) when testing for a negative correlation.

ISSN: 1472-6807