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Table 6 Total times for RNA2 and RNA1 with coarse-grained mapping

From: Enhancement of accuracy and efficiency for RNA secondary structure prediction by sequence segmentation and MapReduce

Mean Total Time (sec)

RNA2(∼ 1300 bases)

RNA1(∼ 3100 bases)

 

60

150

300

60

150

300

Centered

68.7

99.0

134.3

410.7

618.0

971.7

Optimized

66.7

98.9

131.6

404.3

618.9

986.1

Opti./Cent.

0.97

1.00

0.98

0.98

1.00

1.01

  1. Average total times for the seven sequences in RNA2 and in RNA1 for coarse-grained mapping using centered and optimized methods.