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Table 1 Class I MHC-peptide complexes in the protein databank

From: Types of inter-atomic interactions at the MHC-peptide interface: Identifying commonality from accumulated data

MHC source PDB code MHC alleles Redundant peptide set Non redundant peptide set Peptide length Peptide source Resolution (Å)
Human 1HHJ A*0201 ILKEPVHGV ILKEPVHGV 9 Synthetic 2.50
Human 1AKJ A*0201 Ilkepvhgv   9 HIV-1 RT 2.65
Human 1HHK A*0201 LLFGYPVYV LLFGYPVYV 9 Synthetic 2.50
Human 1AO7 A*0201 llfgypvyv   9 HTLV-1 Tax 2.60
Human 1BD2 A*0201 llfgypvyv   9 HTLV-1 Tax 2.50
Human 1B0G A*0201 ALWGFFPVL ALWGFFPVL 9 Human-peptide P1049 2.60
Human 1HHG A*0201 TLTSCNTSV TLTSCNTSV 9 HIV-1 gp 120 2.60
Human 1HHI A*0201 GILGFVFTL GILGFVFTL 9 Synthetic 2.50
Human 1B0R A*0201 gilgfvftcde   9 Influenza matrix 2.90
Human 2CLR A*0201 MLLSVPLLLG MLLSVPLLLG 10 Synthetic 2.00
Human 1HHH A*0201 FLPSDFFPSV FLPSDFFPSV 10 HBV nucleocapsid 3.00
Human 1TMC A*6801 EVAPPEYHRK EVAPPEYHRK 10 Synthetic 2.30
Human 1AGB B*0801 GGRKKYKL GGRKKYKL 8 HIV-1 gag 2.20
Human 1AGC B*0801 GGKKKYQL GGKKKYQL 8 HIV-1 gag 2.10
Human 1AGD B*0801 GGKKKYKL GGKKKYKL 8 HIV-1 gag 2.05
Human 1AGE B*0801 GGRKKYRL GGRKKYRL 8 HIV-1 gag 2.30
Human 1AGF B*0801 GGKKRYKL GGKKRYKL 8 HIV-1 gag 2.20
Human 1HSA B*2705 ARAAAAAAA ARAAAAAAA 9 - 2.10
Human 1A1N B*3501 VPLRPMTY VPLRPMTY 8 HIV-1 nef 2.00
Human 1A9E B*3501 LPPLDITPY LPPLDITPY 9 EBV-Ebna3c 2.50
Human 1A9B B*3501 lpplditpy   9 EBNA-3C 3.20
Human 1A1M B*5301 TPYDINQML TPYDINQML 9 HIV-2 gag 2.30
Human 1A1O B*5301 KPIVQYDNF KPIVQYDNF 9 HIV-1 nef 2.30
Murine 1OSZ H-2KB RGYLYQGL RGYLYQGL 8 Vsv-nucleoprotein 2.10
Murine 2VAB H-2KB RGYVYQGL RGYVYQGL 8 SV nucleoprotein 2.50
Murine 1KBG H-2KB RGYVYuGL   8 Synthetic 2.20
Murine 1VAC H-2KB SIINFEKL SIINFEKL 8 Ovalbumin 2.50
Murine 1VAD H-2KB SRDHSRTPM SRDHSRTPM 9 Yeast α-glucosidase 2.50
Murine 2VAA H-2KB FAPGNYPAL FAPGNYPAL 9 Vsv nucleoprotein 2.30
Murine 1BZ9 H-2DB FAPGVFPYM FAPGVFPYM 9 Peptide P1027 2.80
Murine 1CE6 H-2DB FAPGNYPAL FAPGNYPAL 9 SV nucleoprotein 2.90
Murine 1QLF H-2DB FAPSNYPAL FAPSNYPAL 9 SV-nucleoprotein 2.65
Murine 1BII H-2DD RGPGRAFVTI RGPGRAFVTI 10 HIV-1 P18–110 2.40
Murine 1LDP H-2LD APAAAAAAM APAAAAAAM 9 Natural peptide 3.10
  1. References: 1HHG, 1HHH, 1HHI, 1HHJ and 1HHK [43]; 1AKJ [44]; 1AO7 [45]; 1BD2 [46]; B0G, 1BZ9 [47]; 1B0R [48]; 2CLR [49]; 1TMC [50]; 1AGB, 1AGC, 1AGD, 1AGE and 1AGF [51]; 1HSA [52]; 1A1N [53]; 1A9E, 1A9B [54]; 1A1M, 1A1O [55], 1OSZ [56]; 2VAA, 2VAB [57]; 1KBG [58]; 1VAC, 1VAD [59]; 1CE6, 1QLF [60]; 1BII [61]; 1LDP [62].