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Table 1 Results of prediction of buried and lipid-exposed faces of TM helices. The columns list the number of helices with correctly predicted lipid-exposed face or lipid-buried face when average lipophilicity ( L ¯ f MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacuWGmbatgaqeamaaBaaaleaacqWGMbGzaeqaaaaa@2F66@ ), average entropy ( E ¯ f MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacuWGfbqrgaqeamaaBaaaleaacqWGMbGzaeqaaaaa@2F58@ ) or LIPS function (S f ) was used.

From: Prediction of transmembrane helix orientation in polytopic membrane proteins

PDB

Helix count1

L ¯ f MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacuWGmbatgaqeamaaBaaaleaacqWGMbGzaeqaaaaa@2F66@ Exp2

L ¯ f MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacuWGmbatgaqeamaaBaaaleaacqWGMbGzaeqaaaaa@2F66@ Brd3

E ¯ f MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacuWGfbqrgaqeamaaBaaaleaacqWGMbGzaeqaaaaa@2F58@ Exp2

E ¯ f MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacuWGfbqrgaqeamaaBaaaleaacqWGMbGzaeqaaaaa@2F58@ Brd3

S f Exp2

S f Brd3

1C3W

7

2

2

7

7

7

6

1EUL

9

4

4

8

7

9

7

1FX8

4

1

0

3

3

3

3

1IWG

10

4

4

8

6

7

6

1J4N

4

4

2

3

4

4

4

1KPL

10

4

6

7

8

8

9

1KQF

5

4

2

4

3

5

3

1L9H

7

5

5

7

7

7

7

1M3X

11

7

6

9

6

10

8

1NEK

5

5

2

5

4

5

3

1OCR

24

14

11

18

13

21

11

1OKC

6

2

1

4

3

5

3

1PV6

12

6

3

9

4

9

6

1PW4

12

8

9

8

7

10

11

1Q16

5

3

5

5

3

5

5

1Q90

12

6

4

10

7

11

11

1RH5

9

6

2

7

3

7

3

1ZCD

10

5

3

9

6

10

8

Total

162

100%

90

56%

71

44%

131

81%

102

63%

143

88%

114

70%

  1. 1 Number count of lipid-exposed TM helices.
  2. 2 The lipid-exposed helical face is predicted correctly if the highest scoring face has the largest lipid accessible area.
  3. 3 The buried helical face is predicted correctly if the lowest scoring face has the smallest lipid accessible area.