Skip to main content

Table 3 Characteristics of homodimeric interfaces

From: Molecular modeling and characterization of Vibrio cholerae transcription regulator HlyU

 

Vc-HlyU

SmtB

CzrA

CadC

Interface area (Ã…2)

3753

3924

3016

4614

Interface area/Surface area

0.27

0.27

0.23

0.3

Number of atoms

378

392

305

455

Number of residues

95

99

73

118

Fraction of non-polar atoms

0.65

0.68

0.68

0.66

Non-polar interface area (Ã…2)

2526

3020

2221

3307

Fraction of fully buried atoms

0.35

0.44

0.43

0.44

Self-contacting residues

Leu25, Met95, Leu98

Phe40, Leu110

Phe20, Thr89, Met90

Leu36, Ile107, Ile110

  1. Both the subunits have been indicated in the calculation.