BMC Structural Biology

Table 6 Prediction scores obtained for the 505 sequences of the independent test set using multiple sequence information

From: Analysis of an optimal hidden Markov model for secondary structure prediction

	${OSS-HMM}_{d s s p}^{a}$				PSIPRED
	$Q_{o b s}^{b}$	Q _pred	MCC	SOV	Q _obs	Q _pred	MCC	SOV
Helix	78.5	83.3	0.70	77.5	85.3	85.9	0.77	85.0
Strand	56.1	80.3	0.60	65.1	76.1	78.2	0.70	78.9
Coil	83.8	68.4	0.57	70.8	78.6	76.9	0.63	71.5
	Q ₃	SOV			Q ₃
Global	75.5	72.0			80.5	78.6

^a: OSS-HMM_dsspdenotes 36 state HMM trained using dssp assignment, ^b: predictions scores are reported with the dssp assignment taken as the reference.

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