BMC Structural Biology

Table 2 Features selected by the entropy based method.

From: Prediction of flexible/rigid regions from protein sequences using k-spaced amino acid pairs

k-spaced AA pairs¹
k = 0	k = 1	k = 2	k = 3	k = 4	k = 5	k = 6	k = 7	k = 8	k = 9
DF	AK	DI	AD	AI	DC	DI	ED	DP	AC
EF	FH	ED	AI	AV	HD	FF	GL	EN	EL
EL	KI	EK	AV	AY	IE	FG	PG	GG	KF
KE	KY	FK	GG	DG	NQ	HP	PS	KC	KG
LI	LL	GG	KQ	DS	PG	IL	TI	RI
LL	LQ	GR	LI	EK	QQ	QP	VI	TV
PA	PM	GS	LS	ER	RV	TL	VN	VR
QT	VH	KL	PW	HQ	VL	VR
VI	VL	KS	SG	LL	VV	YC
VP		LL	YH	LV	YL
			PS		MV
			QQ		PD
			VI		SQ
			VK		TK
					VL

¹k-spaced AA pairs represent frequency of the AA pairs that are separated by k other residues in the sequence; for k = 0 the pairs are equivalent to dipeptides.

Back to article page

ISSN: 1472-6807

Contact us

General enquiries: ORSupport@springernature.com